Free for academic non-profit institutions. Other users need a Commercial license

Aliases for EDNRB-AS1 Gene

Subcategory (RNA class) for EDNRB-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for EDNRB-AS1 Gene

  • EDNRB Antisense RNA 1 2 3 5

External Ids for EDNRB-AS1 Gene

Previous GeneCards Identifiers for EDNRB-AS1 Gene

  • GC13P078394

Summaries for EDNRB-AS1 Gene

GeneCards Summary for EDNRB-AS1 Gene

EDNRB-AS1 (EDNRB Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for EDNRB-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for EDNRB-AS1 Gene

Genomics for EDNRB-AS1 Gene

GeneHancer (GH) Regulatory Elements for EDNRB-AS1 Gene

Promoters and enhancers for EDNRB-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13I077831 Enhancer 1 VISTA Ensembl ENCODE 0.4 +14.1 14138 2.2 MITF RAD51 MAX EDNRB EDNRB-AS1 GC13M077918 GC13M077919
GH13I077910 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE 0.2 +96.5 96456 10.3 CTCF PKNOX1 USF1 ZIC2 RAD21 ZNF335 GLIS2 ZBTB48 PRDM10 EZH2 EDNRB LINC01069 GC13M077918 GC13M077919 RNF219-AS1 EDNRB-AS1
GH13I077836 Enhancer 0.7 FANTOM5 Ensembl ENCODE 0.4 +17.6 17601 1.1 EDNRB EDNRB-AS1 GC13M077918 GC13M077919
GH13I077859 Enhancer 0.9 FANTOM5 Ensembl ENCODE 0.3 +41.3 41315 2.3 JUND LEF1 POLR2A JUN FOS EDNRB LINC01069 EDNRB-AS1 GC13M077919 GC13M077918
GH13I077779 Enhancer 0.8 Ensembl ENCODE 0.3 -38.9 -38922 0.9 CTCF ZNF654 JUN TRIM22 RAD21 GABPA POLR2A SMC3 ZNF143 MYC EDNRB EDNRB-AS1 GC13M077708
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around EDNRB-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for EDNRB-AS1 Gene

Genomic Locations for EDNRB-AS1 Gene
chr13:77,818,937-77,908,442
(GRCh38/hg38)
Size:
89,506 bases
Orientation:
Plus strand
chr13:78,393,072-78,482,818
(GRCh37/hg19)

Genomic View for EDNRB-AS1 Gene

Genes around EDNRB-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
EDNRB-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for EDNRB-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for EDNRB-AS1 Gene

Proteins for EDNRB-AS1 Gene

Post-translational modifications for EDNRB-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for EDNRB-AS1 Gene

Domains & Families for EDNRB-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for EDNRB-AS1 Gene

Function for EDNRB-AS1 Gene

Phenotypes From GWAS Catalog for EDNRB-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for EDNRB-AS1 Gene

Localization for EDNRB-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for EDNRB-AS1 Gene

Pathways & Interactions for EDNRB-AS1 Gene

SuperPathways for EDNRB-AS1 Gene

No Data Available

Interacting Proteins for EDNRB-AS1 Gene

Gene Ontology (GO) - Biological Process for EDNRB-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for EDNRB-AS1 Gene

Drugs & Compounds for EDNRB-AS1 Gene

No Compound Related Data Available

Transcripts for EDNRB-AS1 Gene

mRNA/cDNA for EDNRB-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for EDNRB-AS1 Gene

No ASD Table

Relevant External Links for EDNRB-AS1 Gene

GeneLoc Exon Structure for
EDNRB-AS1
ECgene alternative splicing isoforms for
EDNRB-AS1

Expression for EDNRB-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for EDNRB-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for EDNRB-AS1 Gene

This gene is overexpressed in Testis (x21.5).
genes like me logo Genes that share expression patterns with EDNRB-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for EDNRB-AS1 Gene

Orthologs for EDNRB-AS1 Gene

Evolution for EDNRB-AS1 Gene

ENSEMBL:
Gene Tree for EDNRB-AS1 (if available)
TreeFam:
Gene Tree for EDNRB-AS1 (if available)

No data available for Orthologs for EDNRB-AS1 Gene

Paralogs for EDNRB-AS1 Gene

No data available for Paralogs for EDNRB-AS1 Gene

Variants for EDNRB-AS1 Gene

Sequence variations from dbSNP and Humsavar for EDNRB-AS1 Gene

SNP ID Clin Chr 13 pos Variation AA Info Type
rs104894387 risk-factor, pathogenic, Hirschsprung disease 2, Waardenburg syndrome type 4A 77,901,181(+) C/A intron_variant
rs104894388 pathogenic, Waardenburg syndrome type 4A 77,903,543(+) G/C intron_variant
rs104894389 risk-factor, Hirschsprung disease 2 77,901,185(+) C/G/T intron_variant
rs104894390 pathogenic, Waardenburg syndrome type 4A 77,903,200(+) G/A/T intron_variant
rs104894391 pathogenic, ABCD syndrome 77,903,356(+) G/A/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for EDNRB-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv364e199 CNV deletion 23128226
esv2446245 CNV deletion 19546169
esv24551 CNV loss 19812545
esv2661868 CNV deletion 23128226
esv2747694 CNV deletion 23290073
esv3632784 CNV loss 21293372

Additional Variant Information for EDNRB-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
EDNRB-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for EDNRB-AS1 Gene

Disorders for EDNRB-AS1 Gene

Additional Disease Information for EDNRB-AS1

No disorders were found for EDNRB-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for EDNRB-AS1 Gene

Publications for EDNRB-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for EDNRB-AS1 Gene

Sources for EDNRB-AS1 Gene

Content
Loading form....