Aliases for EDDM3CP Gene

Aliases for EDDM3CP Gene

  • Epididymal Protein 3C, Pseudogene 2 3 5
  • Family With Sequence Similarity 12, Member C (Pseudogene) 2 3
  • HE3-GAMMA 2 3
  • FAM12CP 3
  • EDDM3CP 5

External Ids for EDDM3CP Gene

Previous HGNC Symbols for EDDM3CP Gene

  • FAM12CP

Previous GeneCards Identifiers for EDDM3CP Gene

  • GC02M135076

Summaries for EDDM3CP Gene

GeneCards Summary for EDDM3CP Gene

EDDM3CP (Epididymal Protein 3C, Pseudogene) is a Pseudogene.

Additional gene information for EDDM3CP Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for EDDM3CP Gene

Genomics for EDDM3CP Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for EDDM3CP Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J134324 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.7 -4.0 -4021 10 CEBPA CEBPB IRF9 HNF4A ELF1 CEBPG ATF2 RCOR1 HLF SPI1 MGAT5 EDDM3CP lnc-TMEM163-3 lnc-MGAT5-3 TMEM163
GH02J134335 Enhancer 1 Ensembl ENCODE dbSUPER 0.4 -17.1 -17138 3.8 BCL11A IRF4 EBF1 ZNF316 CBFB BATF STAT5A NFATC1 MTA3 NR2F1 MGAT5 EDDM3CP lnc-MGAT5-3 TMEM163
GH02J134359 Enhancer 1 Ensembl ENCODE dbSUPER 0.3 -39.6 -39582 1.3 FEZF1 ZIC2 FOXA2 ZNF511 ETV4 JUND CREM SOX5 HMG20A NR2F6 EDDM3CP lnc-MGAT5-3 MGAT5 TMEM163
GH02J134367 Enhancer 1.1 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.3 -47.7 -47723 3 FOXA2 PRDM6 TCF7 MAFK TRIM28 OSR2 MZF1 PRDM10 RUNX3 NFIB MGAT5 EDDM3CP lnc-MGAT5-3 TMEM163
GH02J134410 Enhancer 1.3 ENCODE CraniofacialAtlas dbSUPER 0.2 -92.0 -91980 2.8 CHD2 MXD4 CEBPA FOXA1 CTCF ZIC2 HOMEZ THAP11 SIN3A REST MGAT5 lnc-MGAT5-3 EDDM3CP TMEM163
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around EDDM3CP on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for EDDM3CP Gene

Latest Assembly
chr2:134,319,554-134,320,180
(GRCh38/hg38)
Size:
627 bases
Orientation:
Minus strand

Previous Assembly
chr2:135,077,125-135,077,751
(GRCh37/hg19 by Entrez Gene)
Size:
627 bases
Orientation:
Minus strand

chr2:135,077,225-135,077,649
(GRCh37/hg19 by Ensembl)
Size:
425 bases
Orientation:
Minus strand

Genomic View for EDDM3CP Gene

Genes around EDDM3CP on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
EDDM3CP Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for EDDM3CP Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for EDDM3CP Gene

Proteins for EDDM3CP Gene

Post-translational modifications for EDDM3CP Gene

No Post-translational modifications

No data available for DME Specific Peptides for EDDM3CP Gene

Domains & Families for EDDM3CP Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for EDDM3CP Gene

Function for EDDM3CP Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for EDDM3CP Gene

Localization for EDDM3CP Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for EDDM3CP Gene

Pathways & Interactions for EDDM3CP Gene

PathCards logo

SuperPathways for EDDM3CP Gene

No Data Available

Gene Ontology (GO) - Biological Process for EDDM3CP Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for EDDM3CP Gene

Drugs & Compounds for EDDM3CP Gene

No Compound Related Data Available

Transcripts for EDDM3CP Gene

mRNA/cDNA for EDDM3CP Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for EDDM3CP Gene

No ASD Table

Relevant External Links for EDDM3CP Gene

GeneLoc Exon Structure for
EDDM3CP

Expression for EDDM3CP Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for EDDM3CP Gene

genes like me logo Genes that share expression patterns with EDDM3CP: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for EDDM3CP Gene

Orthologs for EDDM3CP Gene

Evolution for EDDM3CP Gene

ENSEMBL:
Gene Tree for EDDM3CP (if available)
TreeFam:
Gene Tree for EDDM3CP (if available)

No data available for Orthologs for EDDM3CP Gene

Paralogs for EDDM3CP Gene

No data available for Paralogs for EDDM3CP Gene

Variants for EDDM3CP Gene

Additional Variant Information for EDDM3CP Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
EDDM3CP

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for EDDM3CP Gene

Disorders for EDDM3CP Gene

No disorders were found for EDDM3CP Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for EDDM3CP Gene

Publications for EDDM3CP Gene

  1. Major human epididymis-specific gene product, HE3, is the first representative of a novel gene family. (PMID: 7514008) Kirchhoff C … Ivell R (Molecular reproduction and development 1994) 2 3

Products for EDDM3CP Gene

Sources for EDDM3CP Gene