Aliases for ECE1-AS1 Gene

Subcategory (RNA class) for ECE1-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ECE1-AS1 Gene

  • ECE1 Antisense RNA 1 2 3 5
  • ECE1-AS1 2 5
  • NONHSAG000598.2 91
  • HSALNG0001498 164
  • Lnc-NBPF3-3 165

External Ids for ECE1-AS1 Gene

Summaries for ECE1-AS1 Gene

GeneCards Summary for ECE1-AS1 Gene

ECE1-AS1 (ECE1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ECE1-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ECE1-AS1 Gene

Genomics for ECE1-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ECE1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J021288 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 600.7 -0.4 -353 9.5 PRDM10 ZNF629 KDM1A BACH1 JUND LARP7 STAT3 PHF21A RELA ZIC2 ECE1 ECE1-AS1 ENSG00000236936 RAP1GAP EIF4G3 NBPF2P ALPL lnc-EIF4G3-5 lnc-NBPF3-45
GH01J021312 Promoter/Enhancer 2.1 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.3 +28.5 28533 18.7 HNRNPL CREB1 GATAD2A CTCF ATF7 PRDM10 REST ZNF629 TFE3 RFX1 ECE1 NBPF3 ENSG00000236936 EIF4G3 USP48 NBPF2P ALPL RF00017-097 ECE1-AS1
GH01J021301 Promoter/Enhancer 1.4 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 +10.2 10208 3.2 HNRNPL PRDM10 CTCF PRDM1 ZIC2 PATZ1 REST ZNF24 ZSCAN5C WT1 NBPF3 ECE1-AS1 RF00017-097 ECE1 EIF4G3
GH01J021298 Enhancer 0.6 ENCODE dbSUPER 0.7 +4.9 4873 0.2 ZIC2 ZNF600 ZNF189 KLF17 GLIS1 SP7 ECE1-AS1 RF00017-097 ECE1 EIF4G3
GH01J021307 Enhancer 1.1 ENCODE CraniofacialAtlas dbSUPER 0.4 +15.3 15311 2.2 ZNF629 PRDM10 ZIC2 ZNF600 NRF1 ZBTB44 SP2 ZNF524 CTBP1 ESR1 NBPF3 RF00017-097 ECE1-AS1 ECE1 EIF4G3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ECE1-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ECE1-AS1 Gene

Genomic Locations for ECE1-AS1 Gene
chr1:21,293,290-21,299,874
(GRCh38/hg38)
Size:
6,585 bases
Orientation:
Plus strand
chr1:21,619,783-21,626,362
(GRCh37/hg19)
Size:
6,580 bases
Orientation:
Plus strand

Genomic View for ECE1-AS1 Gene

Genes around ECE1-AS1 on UCSC Golden Path with GeneCards custom track
ECE1-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ECE1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ECE1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ECE1-AS1 Gene

Proteins for ECE1-AS1 Gene

Post-translational modifications for ECE1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ECE1-AS1 Gene

Domains & Families for ECE1-AS1 Gene

Gene Families for ECE1-AS1 Gene

genes like me logo Genes that share domains with ECE1-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ECE1-AS1 Gene

Function for ECE1-AS1 Gene

Phenotypes From GWAS Catalog for ECE1-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ECE1-AS1 Gene

Localization for ECE1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ECE1-AS1 Gene

Pathways & Interactions for ECE1-AS1 Gene

PathCards logo

SuperPathways for ECE1-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ECE1-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ECE1-AS1 Gene

Drugs & Compounds for ECE1-AS1 Gene

No Compound Related Data Available

Transcripts for ECE1-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ECE1-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075BCD7_9606 lncRNA 2574 3

HGNC: 40203,

RefSeq: NR_038404,

NONCODE: NONHSAT001407.2,

URS00004F4E33_9606 lncRNA 2479 1

Ensembl: ENST00000449034 (view in UCSC) ,

URS0000EF5E82_9606 lncRNA 1925 1

Ensembl: ENST00000655030 (view in UCSC) ,

URS0000D5BFD7_9606 lncRNA 1055 2

LncBook: HSALNT0002822,

LNCipedia: lnc-NBPF3-3:9,

ECE1-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ECE1-AS1 Gene

No ASD Table

Relevant External Links for ECE1-AS1 Gene

GeneLoc Exon Structure for
ECE1-AS1

No data available for mRNA/cDNA for ECE1-AS1 Gene

Expression for ECE1-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for ECE1-AS1

SOURCE GeneReport for Unigene cluster for ECE1-AS1 Gene:

Hs.663049
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ECE1-AS1 Gene

Orthologs for ECE1-AS1 Gene

Evolution for ECE1-AS1 Gene

ENSEMBL:
Gene Tree for ECE1-AS1 (if available)
TreeFam:
Gene Tree for ECE1-AS1 (if available)

No data available for Orthologs for ECE1-AS1 Gene

Paralogs for ECE1-AS1 Gene

No data available for Paralogs for ECE1-AS1 Gene

Variants for ECE1-AS1 Gene

Additional dbSNP identifiers (rs#s) for ECE1-AS1 Gene

Additional Variant Information for ECE1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ECE1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ECE1-AS1 Gene

Disorders for ECE1-AS1 Gene

No disorders were found for ECE1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ECE1-AS1 Gene

Publications for ECE1-AS1 Gene

No publications were found for ECE1-AS1 Gene.

No data available for Mastermind for ECE1-AS1 Gene

Products for ECE1-AS1 Gene

Sources for ECE1-AS1 Gene