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Aliases for DUXAP9 Gene

Aliases for DUXAP9 Gene

  • Double Homeobox A Pseudogene 9 2 3 5
  • Long Intergenic Non-Protein Coding RNA 1296 2 3
  • LncRNA-CTD903 3
  • LINC01296 3

External Ids for DUXAP9 Gene

Previous HGNC Symbols for DUXAP9 Gene

  • LINC01296

Previous GeneCards Identifiers for DUXAP9 Gene

  • GC14U900508
  • GC14M018950
  • GC14M019887
  • GC22M000020
  • GC14P019104
  • GC14P019080
  • GC14P019098
  • GC14P019116
  • GC14P019135
  • GC14P019154
  • GC14P019171

Summaries for DUXAP9 Gene

Entrez Gene Summary for DUXAP9 Gene

  • Homeobox genes encode DNA-binding proteins, many of which are thought to be involved in early embryonic development. Homeobox genes encode a DNA-binding domain of 60 to 63 amino acids referred to as the homeodomain. This pseudogene is a member of the DUXA homeobox gene family. [provided by RefSeq, Jul 2008]

GeneCards Summary for DUXAP9 Gene

DUXAP9 (Double Homeobox A Pseudogene 9) is a Pseudogene.

Additional gene information for DUXAP9 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DUXAP9 Gene

Genomics for DUXAP9 Gene

GeneHancer (GH) Regulatory Elements for DUXAP9 Gene

Promoters and enhancers for DUXAP9 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14I019062 Promoter 0.5 Ensembl 550.8 +0.5 484 1.2 DUXAP9 LINC01296 PIR51599
GH14I019063 Enhancer 0.2 Ensembl 550.8 +1.9 1885 1.2 DUXAP9 LINC01296 PIR51599
GH14I019050 Enhancer 0.2 Ensembl 0.4 -12.2 -12215 0.2 LOC105378171 DUXAP9 ENSG00000258314
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around DUXAP9 on UCSC Golden Path with GeneCards custom track

Genomic Locations for DUXAP9 Gene

Genomic Locations for DUXAP9 Gene
chr14:19,062,316-19,115,270
(GRCh38/hg38)
Size:
52,955 bases
Orientation:
Plus strand
chr14:19,881,382-19,883,648
(GRCh37/hg19)

Genomic View for DUXAP9 Gene

Genes around DUXAP9 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
DUXAP9 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DUXAP9 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DUXAP9 Gene

Proteins for DUXAP9 Gene

Post-translational modifications for DUXAP9 Gene

No Post-translational modifications

No data available for DME Specific Peptides for DUXAP9 Gene

Domains & Families for DUXAP9 Gene

Gene Families for DUXAP9 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with DUXAP9: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for DUXAP9 Gene

Function for DUXAP9 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for DUXAP9 Gene

Localization for DUXAP9 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for DUXAP9 Gene

Pathways & Interactions for DUXAP9 Gene

SuperPathways for DUXAP9 Gene

No Data Available

Interacting Proteins for DUXAP9 Gene

Gene Ontology (GO) - Biological Process for DUXAP9 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for DUXAP9 Gene

Drugs & Compounds for DUXAP9 Gene

No Compound Related Data Available

Transcripts for DUXAP9 Gene

mRNA/cDNA for DUXAP9 Gene

(8) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for DUXAP9 Gene

No ASD Table

Relevant External Links for DUXAP9 Gene

GeneLoc Exon Structure for
DUXAP9
ECgene alternative splicing isoforms for
DUXAP9

Expression for DUXAP9 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for DUXAP9 Gene

mRNA expression in normal human tissues for DUXAP9 Gene

NURSA nuclear receptor signaling pathways regulating expression of DUXAP9 Gene:

DUXAP9
genes like me logo Genes that share expression patterns with DUXAP9: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for DUXAP9 Gene

Orthologs for DUXAP9 Gene

Evolution for DUXAP9 Gene

ENSEMBL:
Gene Tree for DUXAP9 (if available)
TreeFam:
Gene Tree for DUXAP9 (if available)

No data available for Orthologs for DUXAP9 Gene

Paralogs for DUXAP9 Gene

No data available for Paralogs for DUXAP9 Gene

Variants for DUXAP9 Gene

Additional Variant Information for DUXAP9 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
DUXAP9

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for DUXAP9 Gene

Disorders for DUXAP9 Gene

No disorders were found for DUXAP9 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for DUXAP9 Gene

Publications for DUXAP9 Gene

  1. Overexpression of long non-coding RNA-CTD903 inhibits colorectal cancer invasion and migration by repressing Wnt/β-catenin signaling and predicts favorable prognosis. (PMID: 27035092) Yuan Z … Wang L (International journal of oncology 2016) 2 3 58
  2. Annotation, nomenclature and evolution of four novel homeobox genes expressed in the human germ line. (PMID: 17005330) Booth HA … Holland PW (Gene 2007) 3 58
  3. Long non-coding RNA LINC01296 is a potential prognostic biomarker in patients with colorectal cancer. (PMID: 25894381) Qiu JJ … Yan JB (Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine 2015) 3
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for DUXAP9 Gene

Sources for DUXAP9 Gene

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