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Aliases for DUPD1 Gene

Aliases for DUPD1 Gene

  • Dual Specificity Phosphatase And Pro Isomerase Domain Containing 1 2 3 5
  • Dual Specificity Phosphatase DUPD1 3 4
  • Dual Specificity Phosphatase 27 3 4
  • DUSP27 3 4
  • Atypical Dual-Specific Protein Phosphatase 3
  • EC 3.1.3.16 4
  • EC 3.1.3.48 4
  • FMDSP 3

External Ids for DUPD1 Gene

Previous GeneCards Identifiers for DUPD1 Gene

  • GC10M076142
  • GC10M076467
  • GC10U900628
  • GC10M076797
  • GC10M070796

Summaries for DUPD1 Gene

GeneCards Summary for DUPD1 Gene

DUPD1 (Dual Specificity Phosphatase And Pro Isomerase Domain Containing 1) is a Protein Coding gene. Diseases associated with DUPD1 include Genitopatellar Syndrome. Gene Ontology (GO) annotations related to this gene include phosphatase activity and protein tyrosine/serine/threonine phosphatase activity. An important paralog of this gene is DUSP13.

UniProtKB/Swiss-Prot for DUPD1 Gene

  • Dual specificity phosphatase able to dephosphorylate phosphotyrosine, phosphoserine and phosphothreonine residues, with a preference for phosphotyrosine as a substrate.

Additional gene information for DUPD1 Gene

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DUPD1 Gene

Genomics for DUPD1 Gene

GeneHancer (GH) Regulatory Elements for DUPD1 Gene

Promoters and enhancers for DUPD1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J075058 Promoter/Enhancer 1.1 EPDnew Ensembl 600.4 +15.5 15500 1.1 SIX5 ZNF143 ZNF341 GABPA DEAF1 GABPB1 NFIC ETS1 THAP11 KLF1 DUPD1 DUSP13 ZNF503 PIR52628
GH10J075073 Promoter 0.5 EPDnew 609.6 0.0 -28 0.1 DUPD1 PPIAP13
GH10J075222 Promoter/Enhancer 1.5 Ensembl ENCODE dbSUPER 10 -151.5 -151459 5.3 ELF3 ZNF384 PRDM10 SP1 RFX1 SOX13 KLF9 SCRT2 POLR2A ZBTB48 ZNF503-AS1 DUPD1 COMTD1 VDAC2 PPIAP13
GH10J075135 Enhancer 1.3 Ensembl ENCODE dbSUPER 11 -64.1 -64097 3.5 CC2D1A CBFA2T2 MAFK TRIM24 EGR1 SMARCA4 GMEB1 DPF2 IKZF1 ZNF512 ZNF503-AS1 DUPD1 PPIAP13 GC10P075147 RPS26P42 SAMD8
GH10J074683 Enhancer 1.2 UCNEbase Ensembl 10 +390.7 390731 3 CEBPG SP7 PPARG PKNOX1 CEBPA GATAD2A TCF7L2 ZNF341 SOX13 FOXA1 ADK KAT6B DUPD1 POLR3DP1 GC10M074745
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around DUPD1 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the DUPD1 gene promoter:
  • AML1a
  • c-Myb
  • C/EBPalpha
  • En-1
  • MZF-1
  • Pax-2
  • Pax-2a
  • Pax-2b
  • Pax-6

Genomic Locations for DUPD1 Gene

Genomic Locations for DUPD1 Gene
chr10:75,037,472-75,073,632
(GRCh38/hg38)
Size:
36,161 bases
Orientation:
Minus strand
chr10:76,797,594-76,818,272
(GRCh37/hg19)
Size:
20,679 bases
Orientation:
Minus strand

Genomic View for DUPD1 Gene

Genes around DUPD1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
DUPD1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DUPD1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DUPD1 Gene

Proteins for DUPD1 Gene

  • Protein details for DUPD1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q68J44-DUPD1_HUMAN
    Recommended name:
    Dual specificity phosphatase DUPD1
    Protein Accession:
    Q68J44
    Secondary Accessions:
    • B2RP93

    Protein attributes for DUPD1 Gene

    Size:
    220 amino acids
    Molecular mass:
    25336 Da
    Quaternary structure:
    • Homodimer.

    Three dimensional structures from OCA and Proteopedia for DUPD1 Gene

neXtProt entry for DUPD1 Gene

Post-translational modifications for DUPD1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for DUPD1 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for DUPD1 Gene

Domains & Families for DUPD1 Gene

Gene Families for DUPD1 Gene

HGNC:
Human Protein Atlas (HPA):
  • Enzymes
  • Predicted intracellular proteins

Suggested Antigen Peptide Sequences for DUPD1 Gene

GenScript: Design optimal peptide antigens:
  • Dual specificity phosphatase 27 (DUPD1_HUMAN)

Graphical View of Domain Structure for InterPro Entry

Q68J44

UniProtKB/Swiss-Prot:

DUPD1_HUMAN :
  • Belongs to the protein-tyrosine phosphatase family. Non-receptor class dual specificity subfamily.
Family:
  • Belongs to the protein-tyrosine phosphatase family. Non-receptor class dual specificity subfamily.
genes like me logo Genes that share domains with DUPD1: view

Function for DUPD1 Gene

Molecular function for DUPD1 Gene

UniProtKB/Swiss-Prot Function:
Dual specificity phosphatase able to dephosphorylate phosphotyrosine, phosphoserine and phosphothreonine residues, with a preference for phosphotyrosine as a substrate.
UniProtKB/Swiss-Prot CatalyticActivity:
Reaction=H2O + O-phospho-L-tyrosyl-[protein] = L-tyrosyl-[protein] + phosphate; Xref=Rhea:RHEA:10684, Rhea:RHEA-COMP:10136, Rhea:RHEA-COMP:10137, ChEBI:CHEBI:15377, ChEBI:CHEBI:43474, ChEBI:CHEBI:46858, ChEBI:CHEBI:82620; EC=3.1.3.48; Evidence=. ;.
UniProtKB/Swiss-Prot CatalyticActivity:
Reaction=H2O + O-phospho-L-seryl-[protein] = L-seryl-[protein] + phosphate; Xref=Rhea:RHEA:20629, Rhea:RHEA-COMP:9863, Rhea:RHEA-COMP:11604, ChEBI:CHEBI:15377, ChEBI:CHEBI:29999, ChEBI:CHEBI:43474, ChEBI:CHEBI:83421; EC=3.1.3.16; Evidence=. ;.
UniProtKB/Swiss-Prot CatalyticActivity:
Reaction=H2O + O-phospho-L-threonyl-[protein] = L-threonyl-[protein] + phosphate; Xref=Rhea:RHEA:47004, Rhea:RHEA-COMP:11060, Rhea:RHEA-COMP:11605, ChEBI:CHEBI:15377, ChEBI:CHEBI:30013, ChEBI:CHEBI:43474, ChEBI:CHEBI:61977; EC=3.1.3.16; Evidence=. ;.
UniProtKB/Swiss-Prot BiophysicochemicalProperties:
Kinetic parameters: KM=1.02 mM for para-nitrophenylphosphate (at pH 5.5) {ECO:0000269 PubMed:17498703}; Note=kcat is 0.330 sec(-1) for para-nitrophenylphosphate. {ECO:0000269 PubMed:17498703};

Enzyme Numbers (IUBMB) for DUPD1 Gene

Phenotypes From GWAS Catalog for DUPD1 Gene

Gene Ontology (GO) - Molecular Function for DUPD1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004725 protein tyrosine phosphatase activity IEA --
GO:0008138 protein tyrosine/serine/threonine phosphatase activity IDA 17498703
GO:0016787 hydrolase activity IEA --
GO:0016791 phosphatase activity IEA --
GO:0042803 protein homodimerization activity IDA 21543850
genes like me logo Genes that share ontologies with DUPD1: view
genes like me logo Genes that share phenotypes with DUPD1: view

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials (abm): Clones for DUPD1 - Now 50% OFF >
  • * DUPD1 as ready-to-use vector or virus: ORF | Lenti- | Retro- | Adeno- | AAV- | Protein Vector - Browse All
  • * DUPD1 tags and reporters available: His, HA, Myc, Flag, GFP, RFP, Luciferase - Browse All

No data available for Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for DUPD1 Gene

Localization for DUPD1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for DUPD1 Gene

Cytoplasm.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for DUPD1 gene
Compartment Confidence
cytosol 3
extracellular 1
nucleus 1
mitochondrion 0

Gene Ontology (GO) - Cellular Components for DUPD1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IEA --
GO:0032991 protein-containing complex IDA 21543850
genes like me logo Genes that share ontologies with DUPD1: view

No data available for Subcellular locations from the Human Protein Atlas (HPA) for DUPD1 Gene

Pathways & Interactions for DUPD1 Gene

PathCards logo

SuperPathways for DUPD1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for DUPD1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006470 protein dephosphorylation IDA 17498703
GO:0016311 dephosphorylation IEA --
GO:0035335 peptidyl-tyrosine dephosphorylation IEA --
genes like me logo Genes that share ontologies with DUPD1: view

No data available for Pathways by source and SIGNOR curated interactions for DUPD1 Gene

Drugs & Compounds for DUPD1 Gene

(2) Drugs for DUPD1 Gene - From: HMDB

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Phosphoric acid Approved Pharma 0
Water Approved Pharma 0
genes like me logo Genes that share compounds with DUPD1: view

Transcripts for DUPD1 Gene

mRNA/cDNA for DUPD1 Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Unigene Clusters for DUPD1 Gene

Dual specificity phosphatase and pro isomerase domain containing 1:
Representative Sequences:

CRISPR Products

Clone Products

  • Applied Biological Materials (abm): Clones for DUPD1 - Now 50% OFF >
  • * DUPD1 as ready-to-use vector or virus: ORF | Lenti- | Retro- | Adeno- | AAV- | Protein Vector - Browse All
  • * DUPD1 tags and reporters available: His, HA, Myc, Flag, GFP, RFP, Luciferase - Browse All

Alternative Splicing Database (ASD) splice patterns (SP) for DUPD1 Gene

No ASD Table

Relevant External Links for DUPD1 Gene

GeneLoc Exon Structure for
DUPD1
ECgene alternative splicing isoforms for
DUPD1

Expression for DUPD1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for DUPD1 Gene

mRNA differential expression in normal tissues according to GTEx for DUPD1 Gene

This gene is overexpressed in Muscle - Skeletal (x50.5).

Protein differential expression in normal tissues from HIPED for DUPD1 Gene

This gene is overexpressed in Bone (58.1) and Heart (10.9).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for DUPD1 Gene



Protein tissue co-expression partners for DUPD1 Gene

NURSA nuclear receptor signaling pathways regulating expression of DUPD1 Gene:

DUPD1

SOURCE GeneReport for Unigene cluster for DUPD1 Gene:

Hs.535090
genes like me logo Genes that share expression patterns with DUPD1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for DUPD1 Gene

Orthologs for DUPD1 Gene

This gene was present in the common ancestor of animals.

Orthologs for DUPD1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia DUPD1 35 34
  • 99.09 (n)
OneToOne
mouse
(Mus musculus)
Mammalia Dupd1 17 35 34
  • 86.33 (n)
rat
(Rattus norvegicus)
Mammalia Dupd1 34
  • 85.69 (n)
cow
(Bos Taurus)
Mammalia DUPD1 35
  • 85 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia DUPD1 35
  • 70 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia DUPD1 35
  • 59 (a)
OneToOne
chicken
(Gallus gallus)
Aves DUPD1 35 34
  • 71.53 (n)
OneToOne
lizard
(Anolis carolinensis)
Reptilia DUPD1 35
  • 67 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia dupd1 34
  • 68.06 (n)
zebrafish
(Danio rerio)
Actinopterygii zgc:136906 34
  • 67.06 (n)
DUPD1 (5 of 12) 35
  • 55 (a)
OneToMany
DUPD1 (10 of 12) 35
  • 40 (a)
OneToMany
DUPD1 (7 of 12) 35
  • 36 (a)
OneToMany
DUPD1 (2 of 12) 35
  • 35 (a)
OneToMany
DUPD1 (6 of 12) 35
  • 31 (a)
OneToMany
DUPD1 (4 of 12) 35
  • 26 (a)
OneToMany
DUPD1 (9 of 12) 35
  • 22 (a)
OneToMany
DUPD1 (11 of 12) 35
  • 22 (a)
OneToMany
DUPD1 (8 of 12) 35
  • 20 (a)
OneToMany
DUPD1 (12 of 12) 35
  • 20 (a)
OneToMany
DUPD1 (1 of 12) 35
  • 19 (a)
OneToMany
DUPD1 (3 of 12) 35
  • 16 (a)
OneToMany
fruit fly
(Drosophila melanogaster)
Insecta CG7378 35
  • 37 (a)
OneToMany
Species where no ortholog for DUPD1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for DUPD1 Gene

ENSEMBL:
Gene Tree for DUPD1 (if available)
TreeFam:
Gene Tree for DUPD1 (if available)
Aminode:
Evolutionary constrained regions (ECRs) for DUPD1: view image

Paralogs for DUPD1 Gene

(4) SIMAP similar genes for DUPD1 Gene using alignment to 1 proteins:

  • DUPD1_HUMAN
genes like me logo Genes that share paralogs with DUPD1: view

Variants for DUPD1 Gene

Sequence variations from dbSNP and Humsavar for DUPD1 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs113146077 likely-benign, KAT6B-Related Spectrum Disorders 75,032,358(-) C/T genic_downstream_transcript_variant, intron_variant
rs114126792 likely-benign, benign, KAT6B-Related Spectrum Disorders, not specified 75,029,231(-) G/A genic_downstream_transcript_variant, intron_variant
rs116978399 likely-benign, KAT6B-Related Spectrum Disorders 75,030,872(-) G/A genic_downstream_transcript_variant, intron_variant
rs12263058 likely-benign, KAT6B-Related Spectrum Disorders 75,031,276(-) A/G genic_downstream_transcript_variant, intron_variant
rs138499019 likely-benign, KAT6B-Related Spectrum Disorders 75,030,425(-) C/A/T genic_downstream_transcript_variant, intron_variant

Structural Variations from Database of Genomic Variants (DGV) for DUPD1 Gene

Variant ID Type Subtype PubMed ID
dgv926n100 CNV gain 25217958
dgv927n100 CNV gain 25217958
nsv7188 CNV insertion 18451855

Variation tolerance for DUPD1 Gene

Residual Variation Intolerance Score: 90.7% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 6.71; 78.67% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for DUPD1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
DUPD1

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for DUPD1 Gene

Disorders for DUPD1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for DUPD1 Gene - From: GeneCards

Disorder Aliases PubMed IDs
genitopatellar syndrome
  • gps
- elite association - COSMIC cancer census association via MalaCards
Search DUPD1 in MalaCards View complete list of genes associated with diseases

Additional Disease Information for DUPD1

genes like me logo Genes that share disorders with DUPD1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for DUPD1 Gene

Publications for DUPD1 Gene

  1. Identification and characterization of DUSP27, a novel dual-specific protein phosphatase. (PMID: 17498703) Friedberg I … Mustelin T (FEBS letters 2007) 3 4 23 58
  2. Structure of human dual-specificity phosphatase 27 at 2.38 Å resolution. (PMID: 21543850) Lountos GT … Waugh DS (Acta crystallographica. Section D, Biological crystallography 2011) 3 4 58
  3. Linkage and genome-wide association analysis of obesity-related phenotypes: association of weight with the MGAT1 gene. (PMID: 19851299) Johansson A … EUROSPAN Consortium (Obesity (Silver Spring, Md.) 2010) 3 45 58
  4. De Novo 1.77-Mb Microdeletion of 10q22.2q22.3 in a Girl With Developmental Delay, Speech Delay, Congenital Cleft Palate, and Bilateral Hearing Impairment. (PMID: 27031267) Lei TY … Liao C (The Cleft palate-craniofacial journal : official publication of the American Cleft Palate-Craniofacial Association 2017) 3 58
  5. A Global Analysis of the Receptor Tyrosine Kinase-Protein Phosphatase Interactome. (PMID: 28065597) Yao Z … Stagljar I (Molecular cell 2017) 3 58

Products for DUPD1 Gene

Sources for DUPD1 Gene

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