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Aliases for DUBR Gene

Subcategory (RNA class) for DUBR Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for DUBR Gene

  • DPPA2 Upstream Binding RNA 2 3 5
  • Long Intergenic Non-Protein Coding RNA 883 2 3
  • LINC00883 3
  • LINC0883 3
  • DUM 3

External Ids for DUBR Gene

Previous HGNC Symbols for DUBR Gene

  • LINC00883

Summaries for DUBR Gene

GeneCards Summary for DUBR Gene

DUBR (DPPA2 Upstream Binding RNA) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for DUBR Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DUBR Gene

Genomics for DUBR Gene

GeneHancer (GH) Regulatory Elements for DUBR Gene

Promoters and enhancers for DUBR Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J107240 Promoter/Enhancer 1.5 Ensembl ENCODE dbSUPER 650.7 +0.6 609 2.6 PKNOX1 SIN3A ZNF335 GLIS2 ZNF207 ZNF143 ZBTB11 ZNF398 ZNF843 GLIS1 LINC00882 DUBR BBX CCDC54 GC03P107248
GH03J107262 Enhancer 1.1 FANTOM5 Ensembl ENCODE dbSUPER 0.3 +23.5 23456 3.1 MEIS2 GATA3 ZNF10 ESR1 FOXA1 TRIM28 CCDC54 BBX LOC649024 LOC101929579 GC03M107248 DUBR
GH03J107285 Enhancer 0.7 ENCODE dbSUPER 0.3 +44.7 44707 0.2 GATA3 NANOG GLIS1 ZNF629 POU5F1 CREB1 ETS1 BBX GC03M107248 LOC649024 DUBR LOC101929579
GH03J107270 Enhancer 0.6 dbSUPER 0.3 +31.4 31398 2.3 CTCF ZNF654 TRIM22 ZNF384 REST RAD21 MITF GATA3 SMC3 ZNF143 CCDC54 BBX LOC101929579 GC03M107248 DUBR LOC649024
GH03J107269 Enhancer 0.6 FANTOM5 ENCODE dbSUPER 0.3 +28.7 28692 0.2 BBX GC03M107248 DUBR LOC649024
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around DUBR on UCSC Golden Path with GeneCards custom track

Genomic Locations for DUBR Gene

Genomic Locations for DUBR Gene
chr3:107,240,692-107,326,964
(GRCh38/hg38)
Size:
86,273 bases
Orientation:
Plus strand
chr3:106,959,539-107,045,811
(GRCh37/hg19)

Genomic View for DUBR Gene

Genes around DUBR on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
DUBR Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DUBR Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DUBR Gene

Function for DUBR Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for DUBR Gene

Localization for DUBR Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for DUBR Gene

Pathways & Interactions for DUBR Gene

No Data Available

Interacting Proteins for DUBR Gene

Gene Ontology (GO) - Biological Process for DUBR Gene

None

No data available for Pathways by source and SIGNOR curated interactions for DUBR Gene

Drugs & Compounds for DUBR Gene

No Compound Related Data Available

Transcripts for DUBR Gene

Alternative Splicing Database (ASD) splice patterns (SP) for DUBR Gene

No ASD Table

Relevant External Links for DUBR Gene

GeneLoc Exon Structure for
DUBR
ECgene alternative splicing isoforms for
DUBR

Expression for DUBR Gene

NURSA nuclear receptor signaling pathways regulating expression of DUBR Gene:

DUBR
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for DUBR Gene

Orthologs for DUBR Gene

Evolution for DUBR Gene

ENSEMBL:
Gene Tree for DUBR (if available)
TreeFam:
Gene Tree for DUBR (if available)

No data available for Orthologs for DUBR Gene

Paralogs for DUBR Gene

No data available for Paralogs for DUBR Gene

Variants for DUBR Gene

Sequence variations from dbSNP and Humsavar for DUBR Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1000099833 -- 107,301,631(+) A/G genic_downstream_transcript_variant, intron_variant
rs1000125653 -- 107,297,414(+) C/T genic_downstream_transcript_variant, intron_variant
rs1000201785 -- 107,306,758(+) C/T genic_downstream_transcript_variant, intron_variant
rs1000236885 -- 107,324,773(+) T/G genic_downstream_transcript_variant, intron_variant
rs1000257628 -- 107,264,181(+) A/G genic_downstream_transcript_variant, intron_variant

Structural Variations from Database of Genomic Variants (DGV) for DUBR Gene

Variant ID Type Subtype PubMed ID
dgv1398e212 CNV loss 25503493
dgv1399e212 CNV loss 25503493
dgv8497n54 CNV loss 21841781
dgv8498n54 CNV loss 21841781
dgv8499n54 CNV loss 21841781
dgv8500n54 CNV loss 21841781
dgv8501n54 CNV loss 21841781
esv2039211 CNV deletion 18987734
esv21602 CNV gain+loss 19812545
esv2725753 CNV deletion 23290073
esv2834791 CNV deletion 24192839
esv3562346 CNV deletion 23714750
esv3597307 CNV loss 21293372
esv4387 CNV loss 18987735
esv8280 CNV loss 19470904
nsv1141976 OTHER inversion 24896259
nsv1151817 CNV deletion 26484159
nsv236844 CNV deletion 16902084
nsv3934 CNV deletion 18451855
nsv436365 CNV deletion 17901297
nsv507115 OTHER sequence alteration 20534489
nsv508235 CNV deletion 20534489
nsv513065 CNV loss 21212237
nsv591265 CNV loss 21841781
nsv820399 CNV deletion 20802225
nsv829653 CNV gain 17160897
nsv953242 CNV deletion 24416366
nsv954330 CNV deletion 24416366

Additional Variant Information for DUBR Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
DUBR

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for DUBR Gene

Disorders for DUBR Gene

No disorders were found for DUBR Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for DUBR Gene

Publications for DUBR Gene

  1. LncRNA Dum interacts with Dnmts to regulate Dppa2 expression during myogenic differentiation and muscle regeneration. (PMID: 25686699) Wang L … Wang H (Cell research 2015) 2 3 58
  2. Role of non-coding RNAs in maintaining primary airway smooth muscle cells. (PMID: 24886442) Perry MM … Chung KF (Respiratory research 2014) 2 3 58
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for DUBR Gene

Sources for DUBR Gene

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