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Aliases for DTX2P1-UPK3BP1-PMS2P11 Gene

Aliases for DTX2P1-UPK3BP1-PMS2P11 Gene

  • DTX2P1-UPK3BP1-PMS2P11 Readthrough, Transcribed Pseudogene 2 3 5
  • DTX2P1-UPK3BP1-PMS2P11 Readthrough (Non-Protein Coding) 2 3
  • PMS2-DTX2-UPK3B Pseudogene 3
  • PMS2L11 3

External Ids for DTX2P1-UPK3BP1-PMS2P11 Gene

Previous GeneCards Identifiers for DTX2P1-UPK3BP1-PMS2P11 Gene

  • GC07P076611
  • GC07P076612
  • GC07P076614
  • GC07P076980

Summaries for DTX2P1-UPK3BP1-PMS2P11 Gene

Entrez Gene Summary for DTX2P1-UPK3BP1-PMS2P11 Gene

  • This locus represents naturally-occurring readthrough transcription spanning multiple pseudogenes: DTX2P1 (DTX2 pseudogene 1), UPK3BP1 (uroplakin 3B pseudogene 1), PMS2P11 (PMS1 homolog 2, mismatch repair system component pseudogene 11). Some transcripts may also extend to PMS2P9 (PMS1 homolog 2, mismatch repair system component pseudogene 9). The readthrough transcripts likely do not encode functional proteins. [provided by RefSeq, Jan 2016]

GeneCards Summary for DTX2P1-UPK3BP1-PMS2P11 Gene

DTX2P1-UPK3BP1-PMS2P11 (DTX2P1-UPK3BP1-PMS2P11 Readthrough, Transcribed Pseudogene) is a Pseudogene.

Additional gene information for DTX2P1-UPK3BP1-PMS2P11 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DTX2P1-UPK3BP1-PMS2P11 Gene

Genomics for DTX2P1-UPK3BP1-PMS2P11 Gene

GeneHancer (GH) Regulatory Elements for DTX2P1-UPK3BP1-PMS2P11 Gene

Promoters and enhancers for DTX2P1-UPK3BP1-PMS2P11 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07J076959 Promoter/Enhancer 0.7 Ensembl dbSUPER 650.7 +0.3 266 1.4 DTX2P1-UPK3BP1-PMS2P11 ENSG00000283398 GC07M076954 GC07M076953 GC07M076952
GH07J076957 Enhancer 0.2 dbSUPER 650.7 -1.9 -1872 0.4 DTX2P1-UPK3BP1-PMS2P11 GC07M076951 GC07M076949 GC07M076954 GC07M076953 GC07M076952
GH07J076963 Enhancer 0.4 Ensembl dbSUPER 0.7 +3.9 3915 1.5 PMS2P9 ENSG00000236280 DTX2P1-UPK3BP1-PMS2P11 ENSG00000283398 GC07M076954 GC07M076953 GC07M076952
GH07J077007 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.2 +48.2 48210 0.7 SMARCE1 MAZ ESRRA NFIA NFIB RXRA SIN3A DPF2 MNT RAD21 UPK3BP1 ZP3 PMS2P11 GC07M076952 GC07M076953 GC07M076954 GC07M076981 GC07M076982 GC07M076983 GC07M076985
GH07J076984 Enhancer 0.6 Ensembl dbSUPER 0.3 +25.0 24965 1.6 ZNF687 IKZF1 DTX2P1 UPK3BP1 DTX2P1-UPK3BP1-PMS2P11 GC07M076952 GC07M076953 GC07M076954 GC07M076981 GC07M076982 GC07M076983 GC07M076985
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around DTX2P1-UPK3BP1-PMS2P11 on UCSC Golden Path with GeneCards custom track

Genomic Locations for DTX2P1-UPK3BP1-PMS2P11 Gene

Genomic Locations for DTX2P1-UPK3BP1-PMS2P11 Gene
83,941 bases
Plus strand
62,954 bases
Plus strand

Genomic View for DTX2P1-UPK3BP1-PMS2P11 Gene

Genes around DTX2P1-UPK3BP1-PMS2P11 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
DTX2P1-UPK3BP1-PMS2P11 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DTX2P1-UPK3BP1-PMS2P11 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DTX2P1-UPK3BP1-PMS2P11 Gene

Proteins for DTX2P1-UPK3BP1-PMS2P11 Gene

Post-translational modifications for DTX2P1-UPK3BP1-PMS2P11 Gene

No Post-translational modifications

No data available for DME Specific Peptides for DTX2P1-UPK3BP1-PMS2P11 Gene

Domains & Families for DTX2P1-UPK3BP1-PMS2P11 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for DTX2P1-UPK3BP1-PMS2P11 Gene

Function for DTX2P1-UPK3BP1-PMS2P11 Gene

Phenotypes From GWAS Catalog for DTX2P1-UPK3BP1-PMS2P11 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for DTX2P1-UPK3BP1-PMS2P11 Gene

Localization for DTX2P1-UPK3BP1-PMS2P11 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for DTX2P1-UPK3BP1-PMS2P11 Gene

Pathways & Interactions for DTX2P1-UPK3BP1-PMS2P11 Gene

SuperPathways for DTX2P1-UPK3BP1-PMS2P11 Gene

No Data Available

Interacting Proteins for DTX2P1-UPK3BP1-PMS2P11 Gene

Gene Ontology (GO) - Biological Process for DTX2P1-UPK3BP1-PMS2P11 Gene


No data available for Pathways by source and SIGNOR curated interactions for DTX2P1-UPK3BP1-PMS2P11 Gene

Drugs & Compounds for DTX2P1-UPK3BP1-PMS2P11 Gene

No Compound Related Data Available

Transcripts for DTX2P1-UPK3BP1-PMS2P11 Gene

mRNA/cDNA for DTX2P1-UPK3BP1-PMS2P11 Gene

(3) Additional mRNA sequences :
(1) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for DTX2P1-UPK3BP1-PMS2P11 Gene

DTX2P1-UPK3BP1-PMS2P11 readthrough transcribed pseudogene:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for DTX2P1-UPK3BP1-PMS2P11 Gene

No ASD Table

Relevant External Links for DTX2P1-UPK3BP1-PMS2P11 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for DTX2P1-UPK3BP1-PMS2P11 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for DTX2P1-UPK3BP1-PMS2P11 Gene

SOURCE GeneReport for Unigene cluster for DTX2P1-UPK3BP1-PMS2P11 Gene:

genes like me logo Genes that share expression patterns with DTX2P1-UPK3BP1-PMS2P11: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for DTX2P1-UPK3BP1-PMS2P11 Gene

Orthologs for DTX2P1-UPK3BP1-PMS2P11 Gene

Evolution for DTX2P1-UPK3BP1-PMS2P11 Gene

Gene Tree for DTX2P1-UPK3BP1-PMS2P11 (if available)
Gene Tree for DTX2P1-UPK3BP1-PMS2P11 (if available)

No data available for Orthologs for DTX2P1-UPK3BP1-PMS2P11 Gene

Paralogs for DTX2P1-UPK3BP1-PMS2P11 Gene

No data available for Paralogs for DTX2P1-UPK3BP1-PMS2P11 Gene

Variants for DTX2P1-UPK3BP1-PMS2P11 Gene

Sequence variations from dbSNP and Humsavar for DTX2P1-UPK3BP1-PMS2P11 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1000003328 -- 76,993,408(+) T/C intron_variant
rs1000051107 -- 76,979,118(+) G/A/C upstream_transcript_variant
rs1000217532 -- 77,003,021(+) T/C intron_variant
rs1000294337 -- 76,998,479(+) T/G intron_variant
rs1000351008 -- 77,009,030(+) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for DTX2P1-UPK3BP1-PMS2P11 Gene

Variant ID Type Subtype PubMed ID
dgv11464n54 CNV gain 21841781
dgv1218e199 CNV deletion 23128226
dgv121n16 CNV insertion 17901297
dgv22n31 CNV gain 19718026
dgv232e55 CNV gain 17911159
dgv233e55 CNV loss 17911159
dgv63n64 CNV loss 17921354
dgv6475n100 CNV gain 25217958
dgv6501n100 CNV gain 25217958
dgv822n27 CNV loss 19166990
dgv823n27 CNV gain 19166990
esv23975 CNV gain+loss 19812545
esv2422494 CNV duplication 17116639
esv2734687 CNV deletion 23290073
esv2734689 CNV deletion 23290073
esv2734690 CNV deletion 23290073
esv2734691 CNV deletion 23290073
esv2741833 CNV deletion 23290073
esv2742165 CNV deletion 23290073
esv33336 CNV gain 17666407
esv3343331 CNV duplication 20981092
esv34102 CNV loss 18971310
esv3431915 CNV duplication 20981092
esv3613766 CNV loss 21293372
esv3891147 CNV gain+loss 25118596
esv5293 CNV loss 18987735
esv5776 CNV loss 19470904
esv6344 CNV loss 19470904
nsv1034874 CNV loss 25217958
nsv1075036 CNV deletion 25765185
nsv1132650 CNV duplication 24896259
nsv1140203 CNV insertion 24896259
nsv1148810 CNV insertion 26484159
nsv428174 CNV gain 18775914
nsv470321 CNV gain 18288195
nsv517634 CNV gain+loss 19592680
nsv526097 CNV gain 19592680
nsv5801 CNV deletion 18451855
nsv607593 CNV gain 21841781
nsv607645 CNV gain 21841781
nsv8164 CNV gain+loss 18304495
nsv818523 CNV gain 17921354
nsv820936 CNV deletion 20802225
nsv824178 CNV gain 20364138
nsv831038 CNV loss 17160897
nsv951362 CNV deletion 24416366
nsv970544 CNV duplication 23825009
nsv970898 CNV duplication 23825009
nsv981673 CNV duplication 23825009
nsv981674 CNV duplication 23825009

Additional Variant Information for DTX2P1-UPK3BP1-PMS2P11 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for DTX2P1-UPK3BP1-PMS2P11 Gene

Disorders for DTX2P1-UPK3BP1-PMS2P11 Gene

Additional Disease Information for DTX2P1-UPK3BP1-PMS2P11

No disorders were found for DTX2P1-UPK3BP1-PMS2P11 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for DTX2P1-UPK3BP1-PMS2P11 Gene

Publications for DTX2P1-UPK3BP1-PMS2P11 Gene

  1. Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index. (PMID: 20935630) Speliotes EK … Loos RJ (Nature genetics 2010) 3 58
  2. Sequence comparison of human and mouse genes reveals a homologous block structure in the promoter regions. (PMID: 15342556) Suzuki Y … Sugano S (Genome research 2004) 3 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58
  4. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. (PMID: 10737800) Dias Neto E … Simpson AJ (Proceedings of the National Academy of Sciences of the United States of America 2000) 3 58
  5. PMS2-related genes flank the rearrangement breakpoints associated with Williams syndrome and other diseases on human chromosome 7. (PMID: 9344666) Osborne LR … Scherer SW (Genomics 1997) 3 58

Products for DTX2P1-UPK3BP1-PMS2P11 Gene

Sources for DTX2P1-UPK3BP1-PMS2P11 Gene

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