Aliases for DSG2-AS1 Gene

Subcategory (RNA class) for DSG2-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for DSG2-AS1 Gene

  • DSG2 Antisense RNA 1 2 3 5
  • DSG2-AS1 2 168
  • HSALNG0120735 167
  • NONHSAG023635 92

External Ids for DSG2-AS1 Gene

Summaries for DSG2-AS1 Gene

GeneCards Summary for DSG2-AS1 Gene

DSG2-AS1 (DSG2 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with DSG2-AS1 include Restrictive Cardiomyopathy.

Additional gene information for DSG2-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for DSG2-AS1 Gene

Genomics for DSG2-AS1 Gene

GeneHancer (GH) Regulatory Elements for DSG2-AS1 Gene

Promoters and enhancers for DSG2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J031555 Enhancer 0.8 Ensembl ENCODE 500.7 +0.8 820 0.6 CTCF REST RAD21 TRIM22 SMC3 ZNF384 PBX2 ZNF335 RB1 ZNF189 DSG2-AS1 TTR B4GALT6 TRAPPC8 ENSG00000266521 piR-45035-096
GH18J031510 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.3 +43.9 43947 8.8 EP300 FOXK2 CTCF POLR2G NCOR1 KDM6A TCF7 FOXA1 TRIM28 ZBTB25 ENSG00000266521 DSG2 RNU6-1050P B4GALT6 DSC3 DSG1 DSC2 piR-45035-096 DSG2-AS1
GH18J031554 Enhancer 0.4 Ensembl 0.7 +2.0 2047 0.6 RXRA HNF4A REST SP1 YY1 B4GALT6 TRAPPC8 DSG2-AS1 piR-45035-096
GH18J031549 Enhancer 0.6 Ensembl ENCODE 0.4 +7.4 7447 1 SRF RBM22 PKNOX1 PRDM6 PHF21A DSG2-AS1 piR-45035-096 DSG2
GH18J031543 Enhancer 0.2 Ensembl 0.4 +13.2 13247 0.6 TRAPPC8 DSG2-AS1 piR-45035-096 DSG2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around DSG2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for DSG2-AS1 Gene

Genomic Locations for DSG2-AS1 Gene
chr18:31,542,146-31,556,948
(GRCh38/hg38)
Size:
14,803 bases
Orientation:
Minus strand
chr18:29,122,109-29,136,911
(GRCh37/hg19)
Size:
14,803 bases
Orientation:
Minus strand

Genomic View for DSG2-AS1 Gene

Genes around DSG2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
DSG2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DSG2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DSG2-AS1 Gene

Proteins for DSG2-AS1 Gene

Post-translational modifications for DSG2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for DSG2-AS1 Gene

Domains & Families for DSG2-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for DSG2-AS1 Gene

Function for DSG2-AS1 Gene

Phenotypes From GWAS Catalog for DSG2-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for DSG2-AS1 Gene

Localization for DSG2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for DSG2-AS1 Gene

Pathways & Interactions for DSG2-AS1 Gene

PathCards logo

SuperPathways for DSG2-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for DSG2-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for DSG2-AS1 Gene

Drugs & Compounds for DSG2-AS1 Gene

No Compound Related Data Available

Transcripts for DSG2-AS1 Gene

mRNA/cDNA for DSG2-AS1 Gene

11 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
4 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
6 LNCipedia transcripts :
7 NONCODE transcripts :
5 LncBook transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for DSG2-AS1 Gene

No ASD Table

Relevant External Links for DSG2-AS1 Gene

GeneLoc Exon Structure for
DSG2-AS1

Expression for DSG2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for DSG2-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for DSG2-AS1

genes like me logo Genes that share expression patterns with DSG2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for DSG2-AS1 Gene

Orthologs for DSG2-AS1 Gene

Evolution for DSG2-AS1 Gene

ENSEMBL:
Gene Tree for DSG2-AS1 (if available)
TreeFam:
Gene Tree for DSG2-AS1 (if available)

No data available for Orthologs for DSG2-AS1 Gene

Paralogs for DSG2-AS1 Gene

No data available for Paralogs for DSG2-AS1 Gene

Variants for DSG2-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for DSG2-AS1 Gene

SNP ID Clinical significance and condition Chr 18 pos Variation AA Info Type
570467 Uncertain Significance: Arrhythmogenic right ventricular cardiomyopathy, type 10 31,542,597(-) A/C MISSENSE_VARIANT
571384 Uncertain Significance: Arrhythmogenic right ventricular cardiomyopathy, type 10 31,545,955(-) C/T MISSENSE_VARIANT
576360 Uncertain Significance: Arrhythmogenic right ventricular cardiomyopathy, type 10 31,542,524(-) T/A MISSENSE_VARIANT
580912 Uncertain Significance: Arrhythmogenic right ventricular cardiomyopathy, type 10 31,546,667(-) G/A MISSENSE_VARIANT
581285 Uncertain Significance: Arrhythmogenic right ventricular cardiomyopathy, type 10 31,545,892(-) C/G MISSENSE_VARIANT,NON_CODING_TRANSCRIPT_VARIANT

Additional dbSNP identifiers (rs#s) for DSG2-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for DSG2-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv576635 CNV gain 21841781
nsv833615 CNV gain 17160897

Additional Variant Information for DSG2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
DSG2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for DSG2-AS1 Gene

Disorders for DSG2-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for DSG2-AS1 Gene - From: GeneCards

Disorder Aliases PubMed IDs
restrictive cardiomyopathy
  • rcm
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for DSG2-AS1

genes like me logo Genes that share disorders with DSG2-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for DSG2-AS1 Gene

Publications for DSG2-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

Products for DSG2-AS1 Gene

Sources for DSG2-AS1 Gene