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Aliases for DSG1-AS1 Gene

Subcategory (RNA class) for DSG1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for DSG1-AS1 Gene

  • DSG1 Antisense RNA 1 2 3 5

External Ids for DSG1-AS1 Gene

Summaries for DSG1-AS1 Gene

GeneCards Summary for DSG1-AS1 Gene

DSG1-AS1 (DSG1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for DSG1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DSG1-AS1 Gene

Genomics for DSG1-AS1 Gene

GeneHancer (GH) Regulatory Elements for DSG1-AS1 Gene

Promoters and enhancers for DSG1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18I031446 Promoter/Enhancer 1.6 EPDnew FANTOM5 ENCODE dbSUPER 11.3 -24.6 -24560 9.4 STAT1 PKNOX1 JUN CEBPB CEBPG EP300 FOSL1 JUND IKZF1 STAT3 DSG3 DSG1-AS1 DSG2 DSC3 ENSG00000266521
GH18I031485 Enhancer 1.5 VISTA Ensembl ENCODE dbSUPER 6.5 -61.6 -61615 6.1 MEIS2 PKNOX1 BACH1 MAX BMI1 BATF RELA FOSL1 ATF7 FOSL2 ENSG00000266521 DSG1-AS1 DSG3
GH18I031399 Enhancer 0.8 ENCODE 9.1 +26.2 26214 3.5 FOXA2 FEZF1 RAD21 THRB RARA ZNF335 FOS MIXL1 RXRA REST RNU6-167P DSG1 DSC2 DSG1-AS1 GC18P031391 DSG4 PIR43200
GH18I031427 Enhancer 0.6 ENCODE dbSUPER 6.1 -2.2 -2223 2.7 GATA3 ZNF512 DSG1-AS1 DSG3
GH18I031396 Enhancer 1 Ensembl ENCODE 0.3 +29.6 29632 1.9 ELF3 PKNOX1 FOXA2 MLX THRB RARA YY1 CREM THAP11 MIXL1 GC18P031391 DSG4 DSG1-AS1 PIR43200
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around DSG1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for DSG1-AS1 Gene

Genomic Locations for DSG1-AS1 Gene
chr18:31,343,368-31,426,988
(GRCh38/hg38)
Size:
83,621 bases
Orientation:
Minus strand
chr18:28,923,331-29,006,951
(GRCh37/hg19)

Genomic View for DSG1-AS1 Gene

Genes around DSG1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
DSG1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DSG1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DSG1-AS1 Gene

Proteins for DSG1-AS1 Gene

Post-translational modifications for DSG1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for DSG1-AS1 Gene

Domains & Families for DSG1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for DSG1-AS1 Gene

Function for DSG1-AS1 Gene

Phenotypes From GWAS Catalog for DSG1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for DSG1-AS1 Gene

Localization for DSG1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for DSG1-AS1 Gene

Pathways & Interactions for DSG1-AS1 Gene

SuperPathways for DSG1-AS1 Gene

No Data Available

Interacting Proteins for DSG1-AS1 Gene

Gene Ontology (GO) - Biological Process for DSG1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for DSG1-AS1 Gene

Drugs & Compounds for DSG1-AS1 Gene

No Compound Related Data Available

Transcripts for DSG1-AS1 Gene

mRNA/cDNA for DSG1-AS1 Gene

(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for DSG1-AS1 Gene

No ASD Table

Relevant External Links for DSG1-AS1 Gene

GeneLoc Exon Structure for
DSG1-AS1
ECgene alternative splicing isoforms for
DSG1-AS1

Expression for DSG1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for DSG1-AS1 Gene

genes like me logo Genes that share expression patterns with DSG1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for DSG1-AS1 Gene

Orthologs for DSG1-AS1 Gene

Evolution for DSG1-AS1 Gene

ENSEMBL:
Gene Tree for DSG1-AS1 (if available)
TreeFam:
Gene Tree for DSG1-AS1 (if available)

No data available for Orthologs for DSG1-AS1 Gene

Paralogs for DSG1-AS1 Gene

No data available for Paralogs for DSG1-AS1 Gene

Variants for DSG1-AS1 Gene

Sequence variations from dbSNP and Humsavar for DSG1-AS1 Gene

SNP ID Clin Chr 18 pos Variation AA Info Type
rs112493254 uncertain-significance, Localized AR Hypotrichosis 31,376,860(-) G/A genic_upstream_transcript_variant, intron_variant
rs112913648 uncertain-significance, Localized AR Hypotrichosis 31,376,811(-) T/A/C genic_upstream_transcript_variant, intron_variant
rs113255372 uncertain-significance, Localized AR Hypotrichosis 31,400,919(-) T/C genic_upstream_transcript_variant, intron_variant
rs117510013 uncertain-significance, Localized AR Hypotrichosis 31,403,485(-) A/G genic_upstream_transcript_variant, intron_variant
rs12960081 benign, Localized AR Hypotrichosis 31,413,220(-) A/G genic_upstream_transcript_variant, intron_variant

Structural Variations from Database of Genomic Variants (DGV) for DSG1-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv3328n100 CNV gain 25217958
dgv5882n54 CNV gain 21841781
dgv611e214 CNV loss 21293372
dgv975e212 CNV gain 25503493
dgv976e212 CNV loss 25503493
esv1389645 CNV insertion 17803354
esv2661620 CNV deletion 23128226
esv26807 CNV loss 19812545
esv2751776 CNV gain 17911159
esv3303313 CNV mobile element insertion 20981092
esv3308534 CNV mobile element insertion 20981092
esv3374183 CNV insertion 20981092
esv3441653 CNV insertion 20981092
esv3642125 CNV loss 21293372
esv3642126 CNV loss 21293372
esv3893085 CNV loss 25118596
esv991672 CNV insertion 20482838
nsv458045 CNV gain 19166990
nsv521618 CNV loss 19592680
nsv524890 CNV gain 19592680
nsv952697 CNV duplication 24416366
nsv953528 CNV duplication 24416366

Additional Variant Information for DSG1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
DSG1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for DSG1-AS1 Gene

Disorders for DSG1-AS1 Gene

Additional Disease Information for DSG1-AS1

No disorders were found for DSG1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for DSG1-AS1 Gene

Publications for DSG1-AS1 Gene

No publications were found for DSG1-AS1 Gene.

Products for DSG1-AS1 Gene

Sources for DSG1-AS1 Gene

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