Aliases for DSCR4-IT1 Gene

Subcategory (RNA class) for DSCR4-IT1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for DSCR4-IT1 Gene

  • DSCR4 Intronic Transcript 1 2 3 5
  • DSCR4-IT1 2 5 165
  • DSCR4 Intronic Transcript 1 (Non-Protein Coding) 2 3
  • NONHSAG032831.2 91
  • HSALNG0133040 164

External Ids for DSCR4-IT1 Gene

Previous GeneCards Identifiers for DSCR4-IT1 Gene

  • GC00U933253
  • GC21M039379

Summaries for DSCR4-IT1 Gene

GeneCards Summary for DSCR4-IT1 Gene

DSCR4-IT1 (DSCR4 Intronic Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for DSCR4-IT1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for DSCR4-IT1 Gene

Genomics for DSCR4-IT1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for DSCR4-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21J037987 Enhancer 0.7 Ensembl 0.4 +23.4 23418 0.4 PRDM10 ZNF692 ZNF239 ZNF341 ZNF561 ZNF140 ZBTB20 TSHZ1 OSR2 BCL11A ENSG00000242553 TTC3-AS1 DYRK1A DSCR4-IT1 lnc-ERG-3 DSCR4 KCNJ6 LOC105372798
GH21J038027 Enhancer 0.6 Ensembl 0.4 -17.5 -17481 0.6 CREB1 ZNF629 JUND ZBTB11 GABPA FOSL1 KLF17 CREM ATF3 ATF1 KCNJ6 RF00017-3710 DSCR4-IT1 DSCR4 LOC105372798
GH21J038033 Enhancer 0.5 Ensembl 0.4 -22.0 -21982 0.4 PKNOX1 NR2F1 SPI1 NR2F6 PRDM10 KCNJ6 RF00017-3710 DSCR4-IT1 DSCR4 LOC105372798
GH21J037967 Enhancer 0.2 Ensembl 0.3 +43.4 43418 0.8 lnc-ERG-3 DSCR4-IT1 DSCR4 KCNJ6 LOC105372798
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around DSCR4-IT1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for DSCR4-IT1 Gene

Genomic Locations for DSCR4-IT1 Gene
chr21:38,006,544-38,010,619
(GRCh38/hg38)
Size:
4,076 bases
Orientation:
Minus strand
chr21:39,378,846-39,382,920
(GRCh37/hg19)
Size:
4,075 bases
Orientation:
Minus strand

Genomic View for DSCR4-IT1 Gene

Genes around DSCR4-IT1 on UCSC Golden Path with GeneCards custom track
DSCR4-IT1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
DSCR4-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DSCR4-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for DSCR4-IT1 Gene

Proteins for DSCR4-IT1 Gene

Post-translational modifications for DSCR4-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for DSCR4-IT1 Gene

Domains & Families for DSCR4-IT1 Gene

Gene Families for DSCR4-IT1 Gene

genes like me logo Genes that share domains with DSCR4-IT1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for DSCR4-IT1 Gene

Function for DSCR4-IT1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for DSCR4-IT1 Gene

Localization for DSCR4-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for DSCR4-IT1 Gene

Pathways & Interactions for DSCR4-IT1 Gene

PathCards logo

SuperPathways for DSCR4-IT1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for DSCR4-IT1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for DSCR4-IT1 Gene

Drugs & Compounds for DSCR4-IT1 Gene

No Compound Related Data Available

Transcripts for DSCR4-IT1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for DSCR4-IT1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00003EFE4C_9606 lncRNA 424 5

HGNC: 41328,

Ensembl: ENST00000417138 (view in UCSC) ,

LncBook: HSALNT0273452,

LNCipedia: DSCR4-IT1:1,

NONCODE: NONHSAT082071.2,

URS00009C3AD7_9606 lncRNA 424 2

LncBook: HSALNT0273453,

NONCODE: NONHSAT191466.1,

DSCR4-IT1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for DSCR4-IT1 Gene

2 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for DSCR4-IT1 Gene

No ASD Table

Relevant External Links for DSCR4-IT1 Gene

GeneLoc Exon Structure for
DSCR4-IT1

Expression for DSCR4-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for DSCR4-IT1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for DSCR4-IT1

genes like me logo Genes that share expression patterns with DSCR4-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for DSCR4-IT1 Gene

Orthologs for DSCR4-IT1 Gene

Evolution for DSCR4-IT1 Gene

ENSEMBL:
Gene Tree for DSCR4-IT1 (if available)
TreeFam:
Gene Tree for DSCR4-IT1 (if available)

No data available for Orthologs for DSCR4-IT1 Gene

Paralogs for DSCR4-IT1 Gene

No data available for Paralogs for DSCR4-IT1 Gene

Variants for DSCR4-IT1 Gene

Additional Variant Information for DSCR4-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
DSCR4-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for DSCR4-IT1 Gene

Disorders for DSCR4-IT1 Gene

No disorders were found for DSCR4-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for DSCR4-IT1 Gene

Publications for DSCR4-IT1 Gene

  1. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington JJ … Ducar M (Nature biotechnology 2001) 3

Products for DSCR4-IT1 Gene

Sources for DSCR4-IT1 Gene