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Aliases for DSCR4-IT1 Gene

Subcategory (RNA class) for DSCR4-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for DSCR4-IT1 Gene

  • DSCR4 Intronic Transcript 1 2 3 5
  • DSCR4 Intronic Transcript 1 (Non-Protein Coding) 2 3

External Ids for DSCR4-IT1 Gene

Previous GeneCards Identifiers for DSCR4-IT1 Gene

  • GC00U933253
  • GC21M039379

Summaries for DSCR4-IT1 Gene

GeneCards Summary for DSCR4-IT1 Gene

DSCR4-IT1 (DSCR4 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for DSCR4-IT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DSCR4-IT1 Gene

Genomics for DSCR4-IT1 Gene

GeneHancer (GH) Regulatory Elements for DSCR4-IT1 Gene

Promoters and enhancers for DSCR4-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21J038983 Enhancer 2.2 VISTA FANTOM5 Ensembl ENCODE dbSUPER 14.6 -978.8 -978807 11.3 PKNOX1 SMAD1 FOXA2 MLX ARNT ARID4B SIN3A YBX1 FEZF1 ZNF2 HMGN1 RNF6P1 MYL6P2 DSCR10 LOC100288590 DSCR4 DSCR4-IT1 DSCR8 ETS2 ENSG00000235888
GH21J037071 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 14.6 +937.5 937474 4.2 DMAP1 YY1 ZNF213 ZNF416 ZNF143 ZNF548 SP3 NFYC ZNF610 GLIS1 TTC3 PIGP SETD4 ENSG00000242553 DYRK1A MORC3 TTC3-AS1 MRPL20P1 RN7SL678P DSCR4-IT1
GH21J038906 Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 14.6 -900.8 -900812 9.7 HDGF PKNOX1 CLOCK FOXA2 MLX NEUROD1 SIN3A YBX1 ZBTB7B YY1 HMGN1 LCA5L RNF6P1 DSCR10 LOC100288590 DSCR4 MYL6P2 DSCR4-IT1 PSMG1 DSCR8
GH21J038733 Enhancer 1.3 Ensembl ENCODE dbSUPER 14.6 -724.7 -724653 3.5 ARID4B SIN3A ZNF2 IRF4 YY1 ARID2 ZNF143 RXRA MXD4 REST RNF6P1 DSCR4 DSCR10 LOC100288590 MYL6P2 DSCR4-IT1 ERG RPSAP64 DSCR8 KCNJ6
GH21J037915 Promoter/Enhancer 1.5 EPDnew Ensembl ENCODE 0.2 +94.3 94326 1.8 RB1 ZSCAN4 KLF17 SIN3A KLF14 RAD21 ZNF335 GLIS2 EGR1 ZNF143 KCNJ6 GC21M037909 DSCR4-IT1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around DSCR4-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for DSCR4-IT1 Gene

Genomic Locations for DSCR4-IT1 Gene
chr21:38,006,544-38,010,618
(GRCh38/hg38)
Size:
4,075 bases
Orientation:
Minus strand
chr21:39,378,846-39,382,920
(GRCh37/hg19)
Size:
4,075 bases
Orientation:
Minus strand

Genomic View for DSCR4-IT1 Gene

Genes around DSCR4-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
DSCR4-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DSCR4-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for DSCR4-IT1 Gene

Proteins for DSCR4-IT1 Gene

Post-translational modifications for DSCR4-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for DSCR4-IT1 Gene

Domains & Families for DSCR4-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for DSCR4-IT1 Gene

Function for DSCR4-IT1 Gene

Phenotypes From GWAS Catalog for DSCR4-IT1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for DSCR4-IT1 Gene

Localization for DSCR4-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for DSCR4-IT1 Gene

Pathways & Interactions for DSCR4-IT1 Gene

SuperPathways for DSCR4-IT1 Gene

No Data Available

Interacting Proteins for DSCR4-IT1 Gene

Gene Ontology (GO) - Biological Process for DSCR4-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for DSCR4-IT1 Gene

Drugs & Compounds for DSCR4-IT1 Gene

No Compound Related Data Available

Transcripts for DSCR4-IT1 Gene

mRNA/cDNA for DSCR4-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for DSCR4-IT1 Gene

No ASD Table

Relevant External Links for DSCR4-IT1 Gene

GeneLoc Exon Structure for
DSCR4-IT1
ECgene alternative splicing isoforms for
DSCR4-IT1

Expression for DSCR4-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for DSCR4-IT1 Gene

genes like me logo Genes that share expression patterns with DSCR4-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for DSCR4-IT1 Gene

Orthologs for DSCR4-IT1 Gene

Evolution for DSCR4-IT1 Gene

ENSEMBL:
Gene Tree for DSCR4-IT1 (if available)
TreeFam:
Gene Tree for DSCR4-IT1 (if available)

No data available for Orthologs for DSCR4-IT1 Gene

Paralogs for DSCR4-IT1 Gene

No data available for Paralogs for DSCR4-IT1 Gene

Variants for DSCR4-IT1 Gene

Additional Variant Information for DSCR4-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
DSCR4-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for DSCR4-IT1 Gene

Disorders for DSCR4-IT1 Gene

No disorders were found for DSCR4-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for DSCR4-IT1 Gene

Publications for DSCR4-IT1 Gene

  1. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington JJ … Ducar M (Nature biotechnology 2001) 3 58

Products for DSCR4-IT1 Gene

Sources for DSCR4-IT1 Gene

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