DSCAS Gene (RNA Gene)

DSC1/DSC2 Antisense RNA

GC18P031101
GIFtS:
13

Aliases for DSCAS Gene

Subcategory (RNA class) for DSCAS Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for DSCAS Gene

  • DSC1/DSC2 Antisense RNA 2 3 5
  • HSALNG0120718 169
  • NONHSAG023628 94
  • Lnc-DSG1-14 170
  • DSCAS 2

External Ids for DSCAS Gene

Summaries for DSCAS Gene

GeneCards Summary for DSCAS Gene

DSCAS (DSC1/DSC2 Antisense RNA) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for DSCAS Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for DSCAS Gene

Genomics for DSCAS Gene

GeneHancer (GH) Regulatory Elements for DSCAS Gene

Promoters and enhancers for DSCAS Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH18J031097 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 750.6 -0.6 -633 5.9 ZBTB40 CTCF CTBP1 NR2F1 NR2F6 MIXL1 ZNF362 ELF1 L3MBTL2 TEAD4 DSC2 DSCAS piR-38351-228
GH18J031103 Enhancer 0.6 ENCODE 0.6 +2.4 2439 0.2 ZNF362 ZNF629 ATF7 ZNF316 NFE2 KLF4 MAFG ZEB1 HIC1 ATF2 DSC2 DSCAS ENSG00000263698
GH18J031156 Enhancer 0.7 Ensembl ENCODE 0.2 +56.1 56107 1.4 ZNF217 PKNOX1 REST CTBP1 DPF2 GATA3 WT1 PRDM6 SMARCE1 DSC1 DSC2 ENSG00000263698 DSCAS
GH18J031162 Promoter 0.7 EPDnew Ensembl 0.2 +60.9 60947 1 DSC1 DSC2 ENSG00000263698 DSCAS
GH18J031095 Enhancer 0.3 Ensembl 0.4 -6.2 -6153 0.4 ZNF239 piR-38351-228 DSC2 DSCAS
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around DSCAS on UCSC Golden Path with GeneCards custom track

Genomic Locations for DSCAS Gene

Genomic Locations for DSCAS Gene
chr18:31,101,354-31,175,412
(GRCh38/hg38)
Size:
74,059 bases
Orientation:
Plus strand
chr18:28,681,551-28,742,752
(GRCh37/hg19)
Size:
61,202 bases
Orientation:
Plus strand

Genomic View for DSCAS Gene

Genes around DSCAS on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
DSCAS Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DSCAS Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for DSCAS Gene

Proteins for DSCAS Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

No data available for DME Specific Peptides for DSCAS Gene

Domains & Families for DSCAS Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for DSCAS Gene

Function for DSCAS Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for DSCAS Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for DSCAS Gene

Localization for DSCAS Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for DSCAS Gene

Pathways & Interactions for DSCAS Gene

PathCards logo

SuperPathways for DSCAS Gene

No Data Available

Gene Ontology (GO) - Biological Process for DSCAS Gene

None

No data available for Pathways by source and SIGNOR curated interactions for DSCAS Gene

Drugs & Compounds for DSCAS Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for DSCAS Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for DSCAS Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(3) RNACentral transcripts :
(3) LncBook transcripts :
(1) NONCODE transcripts :
(1) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for DSCAS Gene

No ASD Table

Relevant External Links for DSCAS Gene

GeneLoc Exon Structure for
DSCAS
ECgene alternative splicing isoforms for
DSCAS

Expression for DSCAS Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for DSCAS Gene

mRNA expression in normal human tissues for DSCAS Gene
mRNA expression by GTEx for DSCAS Gene

NURSA nuclear receptor signaling pathways regulating expression of DSCAS Gene:

DSCAS
genes like me logo Genes that share expression patterns with DSCAS: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for DSCAS Gene

Orthologs for DSCAS Gene

Evolution for DSCAS Gene

ENSEMBL:
Gene Tree for DSCAS (if available)
TreeFam:
Gene Tree for DSCAS (if available)

No data available for Orthologs for DSCAS Gene

Paralogs for DSCAS Gene

No data available for Paralogs for DSCAS Gene

Variants for DSCAS Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Sequence variations from dbSNP and Humsavar for DSCAS Gene

SNP ID Clin Chr 18 pos Variation AA Info Type
rs1395367133 pathogenic, not provided, Arrhythmogenic right ventricular cardiomyopathy, type 11 31,101,937(+) CC/ intron_variant
rs1555641322 uncertain-significance, Cardiovascular phenotype 31,101,942(+) C/A intron_variant
rs1555641325 uncertain-significance, Arrhythmogenic right ventricular cardiomyopathy, type 11 31,101,950(+) C/T intron_variant
rs1555641335 likely-benign, Cardiovascular phenotype 31,101,960(+) G/T intron_variant
rs188926948 not-provided, uncertain-significance, not specified, Arrhythmogenic right ventricular cardiomyopathy 31,102,379(+) A/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for DSCAS Gene

Variant ID Type Subtype PubMed ID
dgv57n6 CNV deletion 16902084
esv2646471 CNV insertion 19546169
esv2675538 CNV deletion 23128226
esv3305216 CNV mobile element insertion 20981092
esv3310011 CNV mobile element insertion 20981092
esv3404918 CNV insertion 20981092
esv3432249 CNV insertion 20981092
esv3642118 CNV loss 21293372
nsv1109142 CNV deletion 24896259
nsv130642 CNV deletion 16902084
nsv476063 CNV novel sequence insertion 20440878
nsv519734 CNV loss 19592680
nsv820166 CNV loss 19587683

Additional Variant Information for DSCAS Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
DSCAS

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for DSCAS Gene

Disorders for DSCAS Gene

Additional Disease Information for DSCAS

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for DSCAS Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for DSCAS Gene

Publications for DSCAS Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 56

ExternalLinks

View latest publications for DSCAS gene in Mastermind

Products for DSCAS Gene

Sources for DSCAS Gene