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DSCAM-IT1 Gene(RNA Gene)

DSCAM Intronic Transcript 1

GCID:
GC21M040615
GIFtS:
13
Genes Participants
UDN Logo

Aliases for DSCAM-IT1 Gene

Subcategory (RNA class) for DSCAM-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for DSCAM-IT1 Gene

  • DSCAM Intronic Transcript 1 2 3 5
  • DSCAM Intronic Transcript 1 (Non-Protein Coding) 2 3
  • Zag4 3

External Ids for DSCAM-IT1 Gene

Previous GeneCards Identifiers for DSCAM-IT1 Gene

  • GC00U933773
  • GC21M041988

Summaries for DSCAM-IT1 Gene

GeneCards Summary for DSCAM-IT1 Gene

DSCAM-IT1 (DSCAM Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for DSCAM-IT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DSCAM-IT1 Gene

Genomics for DSCAM-IT1 Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for DSCAM-IT1 Gene

Promoters and enhancers for DSCAM-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH21J040685 Enhancer 0.5 FANTOM5 0.2 -55.3 -55316 0.3 ZNF512B ZSCAN4 ZNF488 ZNF48 ZNF785 ZKSCAN1 DSCAM DSCAM-IT1
GH21J040603 Enhancer 0.3 FANTOM5 0.3 +27.2 27224 0.3 DSCAM DSCAM-IT1 ENSG00000207147
GH21J040844 Enhancer 0.7 FANTOM5 ENCODE 0.1 -214.6 -214643 2.3 ZNF316 POLR2A ATF2 MAFK DSCAM DSCAM-IT1
GH21J040592 Enhancer 0.2 FANTOM5 0.3 +37.6 37645 0.3 DSCAM DSCAM-IT1 ENSG00000207147
GH21J040515 Enhancer 0.6 Ensembl ENCODE 0.1 +114.4 114418 1 CTCF RFX1 ENSG00000207147 DSCAM-IT1 DSCAM
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around DSCAM-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for DSCAM-IT1 Gene

Genomic Locations for DSCAM-IT1 Gene
chr21:40,615,378-40,630,767
(GRCh38/hg38)
Size:
15,390 bases
Orientation:
Minus strand
chr21:41,987,304-42,002,693
(GRCh37/hg19)
Size:
15,390 bases
Orientation:
Minus strand

Genomic View for DSCAM-IT1 Gene

Genes around DSCAM-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
DSCAM-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DSCAM-IT1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for DSCAM-IT1 Gene

Proteins for DSCAM-IT1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for DSCAM-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for DSCAM-IT1 Gene

Domains & Families for DSCAM-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for DSCAM-IT1 Gene

Function for DSCAM-IT1 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for DSCAM-IT1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for DSCAM-IT1 Gene

Localization for DSCAM-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for DSCAM-IT1 Gene

Pathways & Interactions for DSCAM-IT1 Gene

SuperPathways for DSCAM-IT1 Gene

PathCards logo More details on SuperPathways for DSCAM-IT1
No Data Available

Interacting Proteins for DSCAM-IT1 Gene

Gene Ontology (GO) - Biological Process for DSCAM-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for DSCAM-IT1 Gene

Drugs & Compounds for DSCAM-IT1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for DSCAM-IT1 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for DSCAM-IT1 Gene

(1) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Unigene Clusters for DSCAM-IT1 Gene

DSCAM intronic transcript 1 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for DSCAM-IT1 Gene

No ASD Table

Relevant External Links for DSCAM-IT1 Gene

GeneLoc Exon Structure for
DSCAM-IT1
ECgene alternative splicing isoforms for
DSCAM-IT1

Expression for DSCAM-IT1 Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for DSCAM-IT1 Gene

mRNA expression in normal human tissues for DSCAM-IT1 Gene
mRNA expression by GTEx for DSCAM-IT1 Gene

SOURCE GeneReport for Unigene cluster for DSCAM-IT1 Gene:

Hs.679746
genes like me logo Genes that share expression patterns with DSCAM-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for DSCAM-IT1 Gene

Orthologs for DSCAM-IT1 Gene

Evolution for DSCAM-IT1 Gene

ENSEMBL:
Gene Tree for DSCAM-IT1 (if available)
TreeFam:
Gene Tree for DSCAM-IT1 (if available)

No data available for Orthologs for DSCAM-IT1 Gene

Paralogs for DSCAM-IT1 Gene

No data available for Paralogs for DSCAM-IT1 Gene

Variants for DSCAM-IT1 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Sequence variations from dbSNP and Humsavar for DSCAM-IT1 Gene

SNP ID Clin Chr 21 pos Variation AA Info Type
rs1000107604 -- 40,626,371(-) T/A intron_variant
rs1000321236 -- 40,622,297(-) G/A intron_variant
rs1000488484 -- 40,625,516(-) C/G intron_variant
rs1000707040 -- 40,627,745(-) C/T intron_variant
rs1000742000 -- 40,620,776(-) CATATAAAAAA/ intron_variant

Structural Variations from Database of Genomic Variants (DGV) for DSCAM-IT1 Gene

Variant ID Type Subtype PubMed ID
esv1557821 CNV insertion 17803354
esv1934003 CNV deletion 18987734
esv2723467 CNV deletion 23290073
esv3647044 CNV loss 21293372
nsv1121591 CNV deletion 24896259
nsv1142331 CNV tandem duplication 24896259

Additional Variant Information for DSCAM-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
DSCAM-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for DSCAM-IT1 Gene

Disorders for DSCAM-IT1 Gene

Additional Disease Information for DSCAM-IT1

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for DSCAM-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for DSCAM-IT1 Gene

Publications for DSCAM-IT1 Gene

  1. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PMID: 23251661) Comuzzie AG … Butte NF (PloS one 2012) 3 58
  2. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington JJ … Ducar M (Nature biotechnology 2001) 3 58

Products for DSCAM-IT1 Gene

Sources for DSCAM-IT1 Gene

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