Aliases for DSCAM-AS1 Gene

Subcategory (RNA class) for DSCAM-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for DSCAM-AS1 Gene

  • DSCAM Antisense RNA 1 2 3 5
  • DSCAM-AS1 2 5 165
  • DSCAM Antisense RNA 1 (Non-Protein Coding) 2 3
  • M41 2 3
  • NONHSAG032888.2 91
  • HSALNG0133168 164

External Ids for DSCAM-AS1 Gene

Previous GeneCards Identifiers for DSCAM-AS1 Gene

  • GC21P041757

Summaries for DSCAM-AS1 Gene

GeneCards Summary for DSCAM-AS1 Gene

DSCAM-AS1 (DSCAM Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with DSCAM-AS1 include Idiopathic Scoliosis and Breast Cancer.

Additional gene information for DSCAM-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for DSCAM-AS1 Gene

Genomics for DSCAM-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for DSCAM-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21J040380 Promoter/Enhancer 1.1 EPDnew dbSUPER 600.7 +0.0 33 0.1 CEBPG CREB1 ZBTB33 ZHX2 FOXA1 GTF2F1 ATF7 HES1 DDX20 CTBP1 DSCAM-AS1 LOC105369294 DSCAM PCP4
GH21J040383 Enhancer 0.8 dbSUPER 600.7 +0.8 808 1.2 CREB1 ZBTB33 TARDBP GTF2F1 HES1 ZFX ZNF512B DDX20 ZNF444 ZNF592 DSCAM-AS1 LOC105369294 DSCAM PCP4
GH21J040343 Enhancer 0.4 dbSUPER 12.3 -37.9 -37931 2.4 CREB1 POLR2A RAD21 DSCAM-AS1 MN309174-440 PCP4 DSCAM
GH21J040384 Enhancer 0.9 Ensembl dbSUPER 0.7 +3.2 3153 0.4 CTCF TARDBP GTF2F1 ZFX ZNF512B EGR1 SMARCA5 DDX20 ZNF592 MLLT1 ENSG00000207147 DSCAM-AS1 LOC105369294 DSCAM PCP4
GH21J040378 Enhancer 0.5 dbSUPER 0.7 -3.2 -3206 2.1 FOXA1 ZKSCAN1 ZNF207 GATA3 JUND ZNF687 DSCAM-AS1 MN309174-440 DSCAM PCP4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around DSCAM-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for DSCAM-AS1 Gene

Genomic Locations for DSCAM-AS1 Gene
chr21:40,383,048-40,385,359
(GRCh38/hg38)
Size:
2,312 bases
Orientation:
Plus strand
chr21:41,755,010-41,757,285
(GRCh37/hg19)
Size:
2,276 bases
Orientation:
Plus strand

Genomic View for DSCAM-AS1 Gene

Genes around DSCAM-AS1 on UCSC Golden Path with GeneCards custom track
DSCAM-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
DSCAM-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DSCAM-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DSCAM-AS1 Gene

Proteins for DSCAM-AS1 Gene

Post-translational modifications for DSCAM-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for DSCAM-AS1 Gene

Domains & Families for DSCAM-AS1 Gene

Gene Families for DSCAM-AS1 Gene

genes like me logo Genes that share domains with DSCAM-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for DSCAM-AS1 Gene

Function for DSCAM-AS1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for DSCAM-AS1 Gene

Localization for DSCAM-AS1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for DSCAM-AS1 gene
Compartment Confidence
plasma membrane 1
extracellular 1
cytoskeleton 1
mitochondrion 1
nucleus 1
endoplasmic reticulum 1
cytosol 1
golgi apparatus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for DSCAM-AS1 Gene

Pathways & Interactions for DSCAM-AS1 Gene

PathCards logo

SuperPathways for DSCAM-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for DSCAM-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for DSCAM-AS1 Gene

Drugs & Compounds for DSCAM-AS1 Gene

No Compound Related Data Available

Transcripts for DSCAM-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for DSCAM-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000054C6DF_9606 lncRNA 1640 6

HGNC: 40197,

RefSeq: NR_038896,

Ensembl: ENST00000427451 (view in UCSC) ,

LncBook: HSALNT0273791,

LNCipedia: DSCAM-AS1:4,

NONCODE: NONHSAT082221.2,

URS00004A0BD3_9606 lncRNA 1282 5

RefSeq: NR_038898,

Ensembl: ENST00000455354 (view in UCSC) ,

LncBook: HSALNT0273792,

LNCipedia: DSCAM-AS1:5,

NONCODE: NONHSAT082223.2,

URS0000312948_9606 lncRNA 1153 4

RefSeq: NR_038900,

Ensembl: ENST00000444046 (view in UCSC) ,

LNCipedia: DSCAM-AS1:3,

NONCODE: NONHSAT082220.2,

URS00001F0CA7_9606 lncRNA 1185 3

Ensembl: ENST00000422749 (view in UCSC) ,

LNCipedia: DSCAM-AS1:2,

NONCODE: NONHSAT082222.2,

URS000075C739_9606 lncRNA 1184 2

RefSeq: NR_038899,

LNCipedia: DSCAM-AS1:7,

DSCAM-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for DSCAM-AS1 Gene

8 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for DSCAM-AS1 Gene

No ASD Table

Relevant External Links for DSCAM-AS1 Gene

GeneLoc Exon Structure for
DSCAM-AS1

Expression for DSCAM-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for DSCAM-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for DSCAM-AS1 Gene

This gene is overexpressed in Prostate (x46.0).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for DSCAM-AS1

SOURCE GeneReport for Unigene cluster for DSCAM-AS1 Gene:

Hs.667053
genes like me logo Genes that share expression patterns with DSCAM-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for DSCAM-AS1 Gene

Orthologs for DSCAM-AS1 Gene

Evolution for DSCAM-AS1 Gene

ENSEMBL:
Gene Tree for DSCAM-AS1 (if available)
TreeFam:
Gene Tree for DSCAM-AS1 (if available)

No data available for Orthologs for DSCAM-AS1 Gene

Paralogs for DSCAM-AS1 Gene

No data available for Paralogs for DSCAM-AS1 Gene

Variants for DSCAM-AS1 Gene

Additional dbSNP identifiers (rs#s) for DSCAM-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for DSCAM-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv520586 CNV loss 19592680
nsv528658 CNV loss 19592680
nsv834100 CNV gain 17160897

Additional Variant Information for DSCAM-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
DSCAM-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for DSCAM-AS1 Gene

Disorders for DSCAM-AS1 Gene

MalaCards: The human disease database

(3) MalaCards diseases for DSCAM-AS1 Gene - From: LncRNADisease and DISEASES

Disorder Aliases PubMed IDs
idiopathic scoliosis
  • scoliosis idiopathic
breast cancer
  • breast lobular carcinoma
luminal breast carcinoma a
  • breast tumor luminal
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with DSCAM-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for DSCAM-AS1 Gene

Publications for DSCAM-AS1 Gene

  1. The lncRNA landscape of breast cancer reveals a role for DSCAM-AS1 in breast cancer progression. (PMID: 27666543) Niknafs YS … Feng FY (Nature communications 2016) 2 3
  2. DSCAM-AS1 up-regulation in invasive ductal carcinoma of breast and assessment of its potential as a diagnostic biomarker. (PMID: 30594914) Khorshidi H … Ghafouri-Fard S (Breast disease 2019) 3
  3. LncRNA DSCAM-AS1 acts as a sponge of miR-137 to enhance Tamoxifen resistance in breast cancer. (PMID: 30203615) Ma Y … Dong J (Journal of cellular physiology 2019) 3
  4. DSCAM-AS1 promotes tumor growth of breast cancer by reducing miR-204-5p and up-regulating RRM2. (PMID: 30457164) Liang WH … Wang ZH (Molecular carcinogenesis 2019) 3
  5. DSCAM-AS1 regulates the G1 /S cell cycle transition and is an independent prognostic factor of poor survival in luminal breast cancer patients treated with endocrine therapy. (PMID: 30430768) Sun W … Xu XE (Cancer medicine 2018) 3

Products for DSCAM-AS1 Gene

Sources for DSCAM-AS1 Gene