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Aliases for DSCAM-AS1 Gene
Subcategory (RNA class) for DSCAM-AS1 Gene
lncRNA
Number of RNA Genes sources:
3 / 17
Aliases for DSCAM-AS1 Gene
External Ids for DSCAM-AS1 Gene
- HGNC: 40197
- Entrez Gene: 100506492
- Ensembl: ENSG00000235123
Previous GeneCards Identifiers for DSCAM-AS1 Gene
- GC21P041757
Summaries for DSCAM-AS1 Gene
GeneCards Summary for DSCAM-AS1 Gene
DSCAM-AS1 (DSCAM Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with DSCAM-AS1 include Idiopathic Scoliosis and Breast Cancer.
Additional gene information for DSCAM-AS1 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for DSCAM-AS1 Gene
Genomics for DSCAM-AS1 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for DSCAM-AS1 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH21J040380 | Promoter/Enhancer | 1.1 | EPDnew dbSUPER | 600.7 | +0.0 | 33 | 0.1 | CEBPG CREB1 ZBTB33 ZHX2 FOXA1 GTF2F1 ATF7 HES1 DDX20 CTBP1 | DSCAM-AS1 LOC105369294 DSCAM PCP4 | |
| GH21J040383 | Enhancer | 0.8 | dbSUPER | 600.7 | +0.8 | 808 | 1.2 | CREB1 ZBTB33 TARDBP GTF2F1 HES1 ZFX ZNF512B DDX20 ZNF444 ZNF592 | DSCAM-AS1 LOC105369294 DSCAM PCP4 | |
| GH21J040343 | Enhancer | 0.4 | dbSUPER | 12.3 | -37.9 | -37931 | 2.4 | CREB1 POLR2A RAD21 | DSCAM-AS1 MN309174-440 PCP4 DSCAM | |
| GH21J040384 | Enhancer | 0.9 | Ensembl dbSUPER | 0.7 | +3.2 | 3153 | 0.4 | CTCF TARDBP GTF2F1 ZFX ZNF512B EGR1 SMARCA5 DDX20 ZNF592 MLLT1 | ENSG00000207147 DSCAM-AS1 LOC105369294 DSCAM PCP4 | |
| GH21J040378 | Enhancer | 0.5 | dbSUPER | 0.7 | -3.2 | -3206 | 2.1 | FOXA1 ZKSCAN1 ZNF207 GATA3 JUND ZNF687 | DSCAM-AS1 MN309174-440 DSCAM PCP4 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around DSCAM-AS1 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for DSCAM-AS1 Gene
Genomic Locations for DSCAM-AS1 Gene
- chr21:40,383,048-40,385,359
- (GRCh38/hg38)
- Size:
- 2,312 bases
- Orientation:
- Plus strand
- chr21:41,755,010-41,757,285
- (GRCh37/hg19)
- Size:
- 2,276 bases
- Orientation:
- Plus strand
Genomic View for DSCAM-AS1 Gene
Genes around DSCAM-AS1 on UCSC Golden Path with GeneCards custom track
DSCAM-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
- Cytogenetic band:
-
- 21q22.2 by HGNC
- 21q22.2 by Entrez Gene
- 21q22.2 by Ensembl
DSCAM-AS1 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for DSCAM-AS1 Gene
Proteins for DSCAM-AS1 Gene
Post-translational modifications for DSCAM-AS1 Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for DSCAM-AS1
- Origene Custom Protein Services for DSCAM-AS1
No data available for DME Specific Peptides for DSCAM-AS1 Gene
Domains & Families for DSCAM-AS1 Gene
Gene Families for DSCAM-AS1 Gene
- HGNC:
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for DSCAM-AS1 Gene
Function for DSCAM-AS1 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
CRISPR Products
- Applied Biological Materials (abm): CRISPR Clones for DSCAM-AS1 - Select products 50% OFF >
- * DSCAM-AS1 CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
- Browse CRISPR knockouts for DSCAM-AS1
miRNA Products
Inhibitory RNA Products
Clone Products
- Applied Biological Materials (abm): Clones for DSCAM-AS1 - Select products 50% OFF >
- * DSCAM-AS1 as ready-to-use vector or virus: ORF | Lenti- | Retro- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for DSCAM-AS1 Gene
Localization for DSCAM-AS1 Gene
| Compartment | Confidence |
|---|---|
| plasma membrane | 1 |
| extracellular | 1 |
| cytoskeleton | 1 |
| mitochondrion | 1 |
| nucleus | 1 |
| endoplasmic reticulum | 1 |
| cytosol | 1 |
| golgi apparatus | 1 |
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for DSCAM-AS1 Gene
Transcripts for DSCAM-AS1 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for DSCAM-AS1 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS000054C6DF_9606 | lncRNA | 1640 | 6 |
HGNC: 40197, RefSeq: NR_038896, Ensembl: ENST00000427451 (view in UCSC) , LncBook: HSALNT0273791, LNCipedia: DSCAM-AS1:4, NONCODE: NONHSAT082221.2, |
| URS00004A0BD3_9606 | lncRNA | 1282 | 5 |
RefSeq: NR_038898, Ensembl: ENST00000455354 (view in UCSC) , LncBook: HSALNT0273792, LNCipedia: DSCAM-AS1:5, NONCODE: NONHSAT082223.2, |
| URS0000312948_9606 | lncRNA | 1153 | 4 |
RefSeq: NR_038900, Ensembl: ENST00000444046 (view in UCSC) , LNCipedia: DSCAM-AS1:3, NONCODE: NONHSAT082220.2, |
| URS00001F0CA7_9606 | lncRNA | 1185 | 3 |
Ensembl: ENST00000422749 (view in UCSC) , LNCipedia: DSCAM-AS1:2, NONCODE: NONHSAT082222.2, |
| URS000075C739_9606 | lncRNA | 1184 | 2 |
RefSeq: NR_038899, LNCipedia: DSCAM-AS1:7, |
DSCAM-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for DSCAM-AS1 Gene
- 8 NCBI additional mRNA sequence :
CRISPR Products
- Applied Biological Materials (abm): CRISPR Clones for DSCAM-AS1 - Select products 50% OFF >
- * DSCAM-AS1 CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
- Browse CRISPR knockouts for DSCAM-AS1
miRNA Products
Inhibitory RNA Products
Clone Products
- Applied Biological Materials (abm): Clones for DSCAM-AS1 - Select products 50% OFF >
- * DSCAM-AS1 as ready-to-use vector or virus: ORF | Lenti- | Retro- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
Relevant External Links for DSCAM-AS1 Gene
- GeneLoc Exon Structure for
- DSCAM-AS1
Expression for DSCAM-AS1 Gene
mRNA differential expression in normal tissues according to GTEx for DSCAM-AS1 Gene
This gene is overexpressed in Prostate (x46.0).
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for DSCAM-AS1
SOURCE GeneReport for Unigene cluster for DSCAM-AS1 Gene:
Hs.667053Primer Products
Gene Expression Assay Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for DSCAM-AS1 Gene
Orthologs for DSCAM-AS1 Gene
No data available for Orthologs for DSCAM-AS1 Gene
Paralogs for DSCAM-AS1 Gene
No data available for Paralogs for DSCAM-AS1 Gene
Variants for DSCAM-AS1 Gene
Additional Variant Information for DSCAM-AS1 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- DSCAM-AS1
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for DSCAM-AS1 Gene
Disorders for DSCAM-AS1 Gene
| Disorder | Aliases | PubMed IDs |
|---|---|---|
| idiopathic scoliosis |
|
|
| breast cancer |
|
|
| luminal breast carcinoma a |
|
|
Search DSCAM-AS1 in MalaCards
View complete list of genes associated with diseases
Additional Disease Information for DSCAM-AS1
No data available for UniProtKB/Swiss-Prot and Genatlas for DSCAM-AS1 Gene
Publications for DSCAM-AS1 Gene
- The lncRNA landscape of breast cancer reveals a role for DSCAM-AS1 in breast cancer progression. (PMID: 27666543) Niknafs YS … Feng FY (Nature communications 2016) 2 3
- DSCAM-AS1 up-regulation in invasive ductal carcinoma of breast and assessment of its potential as a diagnostic biomarker. (PMID: 30594914) Khorshidi H … Ghafouri-Fard S (Breast disease 2019) 3
- LncRNA DSCAM-AS1 acts as a sponge of miR-137 to enhance Tamoxifen resistance in breast cancer. (PMID: 30203615) Ma Y … Dong J (Journal of cellular physiology 2019) 3
- DSCAM-AS1 promotes tumor growth of breast cancer by reducing miR-204-5p and up-regulating RRM2. (PMID: 30457164) Liang WH … Wang ZH (Molecular carcinogenesis 2019) 3
- DSCAM-AS1 regulates the G1 /S cell cycle transition and is an independent prognostic factor of poor survival in luminal breast cancer patients treated with endocrine therapy. (PMID: 30430768) Sun W … Xu XE (Cancer medicine 2018) 3
Products for DSCAM-AS1 Gene
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- Custom Assay Services
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- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for DSCAM-AS1
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- Browse Sino Biological cDNA Clones
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- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for DSCAM-AS1
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Sources for DSCAM-AS1 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) Genetics Home Reference
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNACentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Signalway Antibody
- (175) Open Targets Platform
- (176) 5SRRNADB
- (177) snoDB
- (178) MirGeneDB