Aliases for DSCAM-AS1 Gene
Subcategory (RNA class) for DSCAM-AS1 Gene
lncRNA
Quality Score for this RNA gene is
15
Aliases for DSCAM-AS1 Gene
External Ids for DSCAM-AS1 Gene
- HGNC: 40197
- Entrez Gene: 100506492
- Ensembl: ENSG00000235123
Previous GeneCards Identifiers for DSCAM-AS1 Gene
- GC21P041757
Summaries for DSCAM-AS1 Gene
GeneCards Summary for DSCAM-AS1 Gene
DSCAM-AS1 (DSCAM Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with DSCAM-AS1 include Idiopathic Scoliosis and Breast Cancer.
Additional gene information for DSCAM-AS1 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for DSCAM-AS1 Gene
Genomics for DSCAM-AS1 Gene
GeneHancer (GH) Regulatory Elements for DSCAM-AS1 Gene
Promoters and enhancers for DSCAM-AS1 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH21J040380 | Enhancer | 0.8 | dbSUPER | 750.6 | -1.0 | -985 | 2.2 | E2F8 GATA3 SREBF1 TCF7L2 ZNF217 MNT MTA3 NCOA3 MYC POLR2A | DSCAM-AS1 piR-30791-060 DSCAM | |
| GH21J040383 | Enhancer | 0.8 | dbSUPER | 750.6 | +0.8 | 808 | 1.2 | PPP1R10 SREBF1 ZNF217 MNT MYC POLR2A HDGF FOSL2 CREB1 GATAD2B | DSCAM-AS1 LOC105369294 DSCAM | |
| GH21J040343 | Enhancer | 0.3 | dbSUPER | 12.3 | -37.9 | -37931 | 2.4 | CREB1 POLR2A | DSCAM-AS1 piR-30791-060 DSCAM | |
| GH21J040384 | Enhancer | 0.9 | Ensembl dbSUPER | 0.6 | +3.2 | 3153 | 0.4 | PPP1R10 ZNF785 CTCF SREBF1 TCF7L2 ZNF217 MNT MTA3 POLR2A EGR1 | ENSG00000207147 DSCAM-AS1 LOC105369294 DSCAM | |
| GH21J040378 | Enhancer | 0.5 | dbSUPER | 0.6 | -3.2 | -3206 | 2.1 | ZKSCAN1 ZNF207 GATA3 ZNF687 JUND | DSCAM-AS1 piR-30791-060 DSCAM |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around DSCAM-AS1 on UCSC Golden Path with GeneCards custom track
Genomic Locations for DSCAM-AS1 Gene
Genomic Locations for DSCAM-AS1 Gene
- chr21:40,383,048-40,385,359
- (GRCh38/hg38)
- Size:
- 2,312 bases
- Orientation:
- Plus strand
- chr21:41,755,010-41,757,285
- (GRCh37/hg19)
- Size:
- 2,276 bases
- Orientation:
- Plus strand
Genomic View for DSCAM-AS1 Gene
Genes around DSCAM-AS1 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 21q22.2 by HGNC
- 21q22.2 by Entrez Gene
- 21q22.2 by Ensembl
DSCAM-AS1 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for DSCAM-AS1 Gene
Proteins for DSCAM-AS1 Gene
Post-translational modifications for DSCAM-AS1 Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for DSCAM-AS1
- Origene Custom Protein Services for DSCAM-AS1
No data available for DME Specific Peptides for DSCAM-AS1 Gene
Domains & Families for DSCAM-AS1 Gene
Gene Families for DSCAM-AS1 Gene
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for DSCAM-AS1 Gene
Function for DSCAM-AS1 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
CRISPR Products
- Applied Biological Materials (abm): CRISPR Clones for DSCAM-AS1 - Select products 50% OFF >
- * DSCAM-AS1 CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
- * DSCAM-AS1 CRISPR applications: KO, Activation, Repression, and more - Browse All
- Browse CRISPR knockouts for DSCAM-AS1
miRNA Products
Inhibitory RNA Products
Clone Products
- Applied Biological Materials (abm): Clones for DSCAM-AS1 - Select products 50% OFF >
- * DSCAM-AS1 as ready-to-use vector or virus: ORF | Lenti- | Retro- | Adeno- | AAV- | Protein Vector - Browse All
- * DSCAM-AS1 tags and reporters available: His, HA, Myc, Flag, GFP, RFP, Luciferase - Browse All
No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for DSCAM-AS1 Gene
Localization for DSCAM-AS1 Gene
| Compartment | Confidence |
|---|---|
| mitochondrion | 1 |
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for DSCAM-AS1 Gene
Transcripts for DSCAM-AS1 Gene
mRNA/cDNA for DSCAM-AS1 Gene
- (4) REFSEQ mRNAs :
- (8) Additional mRNA sequences :
- (4) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
-
- ENST00000427451 1640 bps (ENST00000427451.5)
- ENST00000422749 1185 bps (ENST00000422749.5)
- ENST00000444046 1153 bps (ENST00000444046.5)
- ENST00000455354 1282 bps (ENST00000455354.1)
- (9) RNACentral transcripts :
- (7) LNCipedia transcripts :
- (6) NONCODE transcripts :
- (3) LncBook transcripts :
CRISPR Products
- Applied Biological Materials (abm): CRISPR Clones for DSCAM-AS1 - Select products 50% OFF >
- * DSCAM-AS1 CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
- * DSCAM-AS1 CRISPR applications: KO, Activation, Repression, and more - Browse All
- Browse CRISPR knockouts for DSCAM-AS1
miRNA Products
Inhibitory RNA Products
Clone Products
- Applied Biological Materials (abm): Clones for DSCAM-AS1 - Select products 50% OFF >
- * DSCAM-AS1 as ready-to-use vector or virus: ORF | Lenti- | Retro- | Adeno- | AAV- | Protein Vector - Browse All
- * DSCAM-AS1 tags and reporters available: His, HA, Myc, Flag, GFP, RFP, Luciferase - Browse All
Expression for DSCAM-AS1 Gene
mRNA differential expression in normal tissues according to GTEx for DSCAM-AS1 Gene
This gene is overexpressed in Prostate (x46.0).
SOURCE GeneReport for Unigene cluster for DSCAM-AS1 Gene:
Hs.667053Primer Products
Gene Expression Assay Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for DSCAM-AS1 Gene
Orthologs for DSCAM-AS1 Gene
No data available for Orthologs for DSCAM-AS1 Gene
Paralogs for DSCAM-AS1 Gene
No data available for Paralogs for DSCAM-AS1 Gene
Variants for DSCAM-AS1 Gene
| SNP ID | Clin | Chr 21 pos | Variation | AA Info | Type |
|---|---|---|---|---|---|
| rs1000587885 | -- | 40,382,028(+) | G/C | upstream_transcript_variant | |
| rs1001014630 | -- | 40,381,645(+) | T/A | upstream_transcript_variant | |
| rs1001407202 | -- | 40,381,228(+) | T/G | upstream_transcript_variant | |
| rs1002388786 | -- | 40,382,238(+) | G/A/C | upstream_transcript_variant | |
| rs1002421315 | -- | 40,382,463(+) | G/A | upstream_transcript_variant |
Additional Variant Information for DSCAM-AS1 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- DSCAM-AS1
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for DSCAM-AS1 Gene
Disorders for DSCAM-AS1 Gene
| Disorder | Aliases | PubMed IDs |
|---|---|---|
| idiopathic scoliosis |
|
|
| breast cancer |
|
Search DSCAM-AS1 in MalaCards
View complete list of genes associated with diseases
Additional Disease Information for DSCAM-AS1
No data available for UniProtKB/Swiss-Prot and Genatlas for DSCAM-AS1 Gene
Publications for DSCAM-AS1 Gene
- The lncRNA landscape of breast cancer reveals a role for DSCAM-AS1 in breast cancer progression. (PMID: 27666543) Niknafs YS … Feng FY (Nature communications 2016) 2 3 56
- DSCAM-AS1 up-regulation in invasive ductal carcinoma of breast and assessment of its potential as a diagnostic biomarker. (PMID: 30594914) Khorshidi H … Ghafouri-Fard S (Breast disease 2019) 3 56
- DSCAM-AS1 promotes tumor growth of breast cancer by reducing miR-204-5p and up-regulating RRM2. (PMID: 30457164) Liang WH … Wang ZH (Molecular carcinogenesis 2019) 3 56
- Luminal long non-coding RNAs regulated by estrogen receptor alpha in a ligand-independent manner show functional roles in breast cancer. (PMID: 26621851) Miano V … De Bortoli M (Oncotarget 2016) 3 56
- Comprehensive characterization of cancer subtype associated long non-coding RNAs and their clinical implications. (PMID: 25307233) Zhao W … Jiao S (Scientific reports 2014) 3 56
Products for DSCAM-AS1 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
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- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for DSCAM-AS1
- Origene Custom Protein Services for DSCAM-AS1
- Browse OriGene Inhibitory RNA Products For DSCAM-AS1
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for DSCAM-AS1
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For DSCAM-AS1
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
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- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for DSCAM-AS1
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- Search GeneCopoeia for miRNA 3'UTR Target clone products for DSCAM-AS1
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for DSCAM-AS1
Sources for DSCAM-AS1 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) AceView
- (28) ASD
- (29) ECgene
- (30) CGAP SAGE
- (31) SOURCE
- (32) HomoloGene
- (33) PanEnsembl
- (34) euGenes
- (35) SGD
- (36) FlyBase
- (37) WormBase
- (38) Pseudogene
- (39) DGV
- (40) dbSNP
- (41) GenAtlas
- (42) HGMD
- (43) GAD
- (44) BGMUT
- (45) HuGE
- (46) Atlas
- (47) GenBank
- (48) H-invDB
- (49) HORDE
- (50) HUGE
- (51) IMGT
- (52) Leiden
- (53) miRBase
- (54) DME
- (55) OriGene
- (56) PubMed
- (57) R&D Systems
- (58) TGDB
- (59) Tocris
- (60) Abcam
- (61) Novus Biologicals
- (62) ProSpec
- (63) Sino Biological
- (64) GenScript
- (65) Qiagen
- (66) OCA
- (67) Proteopedia
- (68) MOPED
- (69) neXtProt
- (70) Reactome
- (71) GeneGo (Thomson Reuters)
- (72) DISEASES
- (73) SIMAP
- (74) GenomeRNAi
- (75) LifeMap
- (76) miRTarBase
- (77) MalaCards
- (78) Invitrogen
- (79) BitterDB
- (80) ESI-BIO
- (81) RefSeq
- (82) BioSystems
- (83) MaxQB
- (84) IUPHAR
- (85) BioGPS
- (86) Illumina
- (87) COMPARTMENTS
- (88) HOMER
- (89) PaxDb
- (90) ApexBio
- (91) Addgene
- (92) antibodies-online
- (93) CYP
- (94) NONCODE
- (95) TreeFam
- (96) PathCards
- (97) GeneReviews
- (98) GeneTex
- (99) Taconic Biosciences
- (100) GTEx
- (101) ProteomicsDB
- (102) SCBT
- (103) DGIdb
- (104) ClinicalTrials
- (105) RVIS
- (106) SIGNOR
- (107) diseasecard
- (108) NIH Rare Diseases
- (109) Orphanet
- (110) UMLS
- (111) GTR
- (112) Disease Ontology
- (113) Genetics Home Reference
- (114) MeSH
- (115) MedlinePlus
- (116) CDC
- (117) NINDS
- (118) NCBI Bookshelf
- (119) ClinVar
- (120) Gene Damage Index
- (121) HPO
- (122) UDN
- (123) VISTA
- (124) FANTOM5
- (125) ENCODE
- (126) ProSci
- (127) Horizon
- (128) NURSA
- (129) IID
- (130) VectorBuilder
- (131) SNPedia
- (132) BRCA Exchange
- (133) CIViC
- (134) ProteoGenix
- (135) dbSUPER
- (136) TISSUES
- (137) Gene ORGANizer
- (138) abm
- (139) Human Protein Atlas
- (140) GWAS Catalog
- (141) Monarch Initiative
- (142) DataMed
- (143) HumanCyc
- (144) genomics-online
- (145) UCNEbase
- (146) EPDnew
- (147) Applied Biosystems
- (148) GlyConnect
- (149) Aminode
- (150) GeneCopoeia
- (151) GPS-Prot
- (152) RNACentral
- (153) LncRNADisease
- (154) LOVD
- (155) miR2Disease
- (156) DiseaseEnhancer
- (157) Boster Bio
- (158) Biorbyt
- (159) Biocompare
- (160) Mastermind
- (161) CTD^2 Dashboard
- (162) CraniofacialAtlas
- (163) GeneImprint
- (164) Synthego
- (165) Bio Basic
- (166) ENA
- (167) GtRNAdb
- (168) LncBase
- (169) LncBook
- (170) LNCipedia
- (171) LncRNAdb
- (172) Modomics
- (173) PDBe
- (174) Rfam
- (175) SILVA
- (176) snOPY
- (177) SRPDB
- (178) GENCODE
- (179) TarBase
- (180) MyBioSource