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Aliases for DPYD-AS2 Gene

Subcategory (RNA class) for DPYD-AS2 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for DPYD-AS2 Gene

  • DPYD Antisense RNA 2 2 3 5
  • DPYD Antisense RNA 2 (Non-Protein Coding) 2 3

External Ids for DPYD-AS2 Gene

Previous GeneCards Identifiers for DPYD-AS2 Gene

  • GC00U933199
  • GC01P098263

Summaries for DPYD-AS2 Gene

GeneCards Summary for DPYD-AS2 Gene

DPYD-AS2 (DPYD Antisense RNA 2) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for DPYD-AS2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DPYD-AS2 Gene

Genomics for DPYD-AS2 Gene

GeneHancer (GH) Regulatory Elements for DPYD-AS2 Gene

Promoters and enhancers for DPYD-AS2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J097827 Enhancer 0.8 UCNEbase 0.3 +31.1 31082 0.2 PKNOX1 RFX1 TRIM22 EBF1 BMI1 MEF2B POLR2A TARDBP NBN ZNF24 DPYD GC01P097840 DPYD-AS2
GH01J097837 Enhancer 0.4 UCNEbase 0.3 +40.5 40499 0.3 DPYD GC01P097840 DPYD-AS2
GH01J097824 Enhancer 0.2 ENCODE 0.3 +27.9 27915 0.9 DPYD GC01P097840 DPYD-AS2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around DPYD-AS2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for DPYD-AS2 Gene

Genomic Locations for DPYD-AS2 Gene
chr1:97,796,921-97,798,066
(GRCh38/hg38)
Size:
1,146 bases
Orientation:
Plus strand
chr1:98,262,477-98,263,622
(GRCh37/hg19)

Genomic View for DPYD-AS2 Gene

Genes around DPYD-AS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
DPYD-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DPYD-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DPYD-AS2 Gene

Function for DPYD-AS2 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for DPYD-AS2 Gene

Localization for DPYD-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for DPYD-AS2 Gene

Pathways & Interactions for DPYD-AS2 Gene

SuperPathways for DPYD-AS2 Gene

No Data Available

Interacting Proteins for DPYD-AS2 Gene

Gene Ontology (GO) - Biological Process for DPYD-AS2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for DPYD-AS2 Gene

Drugs & Compounds for DPYD-AS2 Gene

No Compound Related Data Available

Transcripts for DPYD-AS2 Gene

mRNA/cDNA for DPYD-AS2 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(3) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for DPYD-AS2 Gene

No ASD Table

Relevant External Links for DPYD-AS2 Gene

GeneLoc Exon Structure for
DPYD-AS2
ECgene alternative splicing isoforms for
DPYD-AS2

Expression for DPYD-AS2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for DPYD-AS2 Gene

mRNA differential expression in normal tissues according to GTEx for DPYD-AS2 Gene

This gene is overexpressed in Testis (x28.3) and Whole Blood (x6.3).
genes like me logo Genes that share expression patterns with DPYD-AS2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for DPYD-AS2 Gene

Orthologs for DPYD-AS2 Gene

Evolution for DPYD-AS2 Gene

ENSEMBL:
Gene Tree for DPYD-AS2 (if available)
TreeFam:
Gene Tree for DPYD-AS2 (if available)

No data available for Orthologs for DPYD-AS2 Gene

Paralogs for DPYD-AS2 Gene

No data available for Paralogs for DPYD-AS2 Gene

Variants for DPYD-AS2 Gene

Sequence variations from dbSNP and Humsavar for DPYD-AS2 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000565260 -- 97,795,095(+) T/G upstream_transcript_variant
rs1000616188 -- 97,795,407(+) A/G upstream_transcript_variant
rs1001297450 -- 97,794,982(+) G/C upstream_transcript_variant
rs1001779103 -- 97,795,498(+) AAAA/AAA upstream_transcript_variant
rs1001828555 -- 97,795,989(+) T/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for DPYD-AS2 Gene

Variant ID Type Subtype PubMed ID
dgv376n54 CNV loss 21841781
nsv830725 CNV loss 17160897

Additional Variant Information for DPYD-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
DPYD-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for DPYD-AS2 Gene

Disorders for DPYD-AS2 Gene

Additional Disease Information for DPYD-AS2

No disorders were found for DPYD-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for DPYD-AS2 Gene

Publications for DPYD-AS2 Gene

  1. LncRNA expression profile of ΔNp63α in cervical squamous cancers and its suppressive effects on LIF expression. (PMID: 28391028) Qian L … Zhou Y (Cytokine 2017) 2 3 58

Products for DPYD-AS2 Gene

Sources for DPYD-AS2 Gene

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