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Aliases for DPRXP4 Gene

Subcategory (RNA class) for DPRXP4 Gene

lncRNA

Aliases for DPRXP4 Gene

  • Divergent-Paired Related Homeobox Pseudogene 4 2 3 5

External Ids for DPRXP4 Gene

ORGUL Members for DPRXP4 Gene

Previous GeneCards Identifiers for DPRXP4 Gene

  • GC17U900559
  • GC17P026326
  • GC17P029302
  • GC17P025513

Summaries for DPRXP4 Gene

Entrez Gene Summary for DPRXP4 Gene

  • Homeobox genes encode DNA-binding proteins, many of which are thought to be involved in early embryonic development. Homeobox genes encode a DNA-binding domain of 60 to 63 amino acids referred to as the homeodomain. This pseudogene is a member of the DPRX homeobox gene family. [provided by RefSeq, Jul 2008]

GeneCards Summary for DPRXP4 Gene

DPRXP4 (Divergent-Paired Related Homeobox Pseudogene 4) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for DPRXP4 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DPRXP4 Gene

Genomics for DPRXP4 Gene

GeneHancer (GH) Regulatory Elements for DPRXP4 Gene

Promoters and enhancers for DPRXP4 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J030975 Enhancer 0.5 dbSUPER 650.7 +0.2 243 0.9 ZNF316 MAFF MAFG EMSY MAFK DPRXP4 RAB11FIP4 RNF135 ENSG00000266340
GH17J030830 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 19.7 -143.3 -143313 2.5 HDGF PKNOX1 FOXA2 ARNT ZFP64 ARID4B SIN3A DMAP1 IRF4 YY1 ATAD5 RPS17P3 SUZ12P1 LOC101927093 DPRXP4 GOSR1 TEFM ENSG00000264456 RNF135 LRRC37BP1
GH17J030905 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 12.7 -68.9 -68858 2.2 MLX ZFP64 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 TEFM ADAP2 GC17P030907 GC17P030905 UTP6 SUZ12P1 ATAD5 GOSR1 NF1 ENSG00000264456
GH17J030116 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 12.4 -857.9 -857892 2.6 PKNOX1 CLOCK SMAD1 ARID4B SIN3A DMAP1 ZNF2 IRF4 YY1 POLR2B PIR49703 NSRP1 GC17P030118 MIR423 MIR3184 ENSG00000266919 ENSG00000265394 NUFIP2 CORO6 ENSG00000264456
GH17J030476 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 12.4 -497.8 -497766 2 ZFP64 DMAP1 IRF4 YY1 SLC30A9 E2F8 ZNF143 SP3 NFYC PPARGC1A GOSR1 ATAD5 SH3GL1P2 ENSG00000264456 RNF135 TEFM LRRC37BP1 SUZ12P1 DPRXP4 NF1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around DPRXP4 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the DPRXP4 gene promoter:
  • NF-1/L
  • NF-1

Genomic Locations for DPRXP4 Gene

Genomic Locations for DPRXP4 Gene
chr17:30,975,335-30,976,004
(GRCh38/hg38)
Size:
670 bases
Orientation:
Plus strand
chr17:29,302,353-29,303,022
(GRCh37/hg19)
Size:
670 bases
Orientation:
Plus strand

Genomic View for DPRXP4 Gene

Genes around DPRXP4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
DPRXP4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DPRXP4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DPRXP4 Gene

Proteins for DPRXP4 Gene

Post-translational modifications for DPRXP4 Gene

No Post-translational modifications

No data available for DME Specific Peptides for DPRXP4 Gene

Domains & Families for DPRXP4 Gene

Gene Families for DPRXP4 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with DPRXP4: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for DPRXP4 Gene

Function for DPRXP4 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for DPRXP4 Gene

Localization for DPRXP4 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for DPRXP4 Gene

Pathways & Interactions for DPRXP4 Gene

SuperPathways for DPRXP4 Gene

No Data Available

Interacting Proteins for DPRXP4 Gene

Gene Ontology (GO) - Biological Process for DPRXP4 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for DPRXP4 Gene

Drugs & Compounds for DPRXP4 Gene

No Compound Related Data Available

Transcripts for DPRXP4 Gene

mRNA/cDNA for DPRXP4 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for DPRXP4 Gene

Divergent-paired related homeobox pseudogene 4:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for DPRXP4 Gene

No ASD Table

Relevant External Links for DPRXP4 Gene

GeneLoc Exon Structure for
DPRXP4
ECgene alternative splicing isoforms for
DPRXP4

Expression for DPRXP4 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for DPRXP4 Gene

NURSA nuclear receptor signaling pathways regulating expression of DPRXP4 Gene:

DPRXP4

SOURCE GeneReport for Unigene cluster for DPRXP4 Gene:

Hs.683578
genes like me logo Genes that share expression patterns with DPRXP4: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for DPRXP4 Gene

Orthologs for DPRXP4 Gene

Evolution for DPRXP4 Gene

ENSEMBL:
Gene Tree for DPRXP4 (if available)
TreeFam:
Gene Tree for DPRXP4 (if available)

No data available for Orthologs for DPRXP4 Gene

Paralogs for DPRXP4 Gene

No data available for Paralogs for DPRXP4 Gene

Variants for DPRXP4 Gene

Sequence variations from dbSNP and Humsavar for DPRXP4 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000013478 -- 30,976,369(+) T/C downstream_transcript_variant
rs1001573923 -- 30,975,534(+) C/T non_coding_transcript_variant
rs1001583646 -- 30,975,769(+) T/A non_coding_transcript_variant
rs1001677610 -- 30,974,495(+) G/A upstream_transcript_variant
rs1003057158 -- 30,975,654(+) T/C non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for DPRXP4 Gene

Variant ID Type Subtype PubMed ID
esv2715813 CNV deletion 23290073
nsv457720 CNV loss 19166990
nsv833412 CNV loss 17160897

Additional Variant Information for DPRXP4 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
DPRXP4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for DPRXP4 Gene

Disorders for DPRXP4 Gene

Additional Disease Information for DPRXP4

Genetic Association Database
(GAD)
Human Genome Epidemiology Navigator
(HuGE)
ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for DPRXP4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for DPRXP4 Gene

Publications for DPRXP4 Gene

  1. RNF135 mutations are not present in patients with Sotos syndrome-like features. (PMID: 19291764) Visser R … Losekoot M (American journal of medical genetics. Part A 2009) 3 44 58

Products for DPRXP4 Gene

Sources for DPRXP4 Gene

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