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Aliases for DPH3P1 Gene

Aliases for DPH3P1 Gene

  • Diphthamide Biosynthesis 3 Pseudogene 1 2 3 5
  • CSL-Type Zinc Finger-Containing Protein 1 3 4
  • C20orf143 3 4
  • DPH3B 3 4
  • ZCSL1 3 4
  • DPH3, KTI11 Homolog (S. Cerevisiae) Pseudogene 1 2
  • DPH3B, KTI11 Homolog B (S. Cerevisiae) 2
  • DPH3 Homolog B (KTI11, S. Cerevisiae) 3
  • Zinc Finger, CSL Domain Containing 1 3
  • Chromosome 20 Open Reading Frame 143 2
  • Zinc Finger, CSL-Type Containing 1 2
  • Putative DPH3 Homolog B 3

External Ids for DPH3P1 Gene

Previous HGNC Symbols for DPH3P1 Gene

  • C20orf143
  • ZCSL1
  • DPH3B

Previous GeneCards Identifiers for DPH3P1 Gene

  • GC20P061477
  • GC20P058195

Summaries for DPH3P1 Gene

Entrez Gene Summary for DPH3P1 Gene

  • This gene may represent a processed pseudogene of DPH3, GeneID: 285381, because it lacks the exon/intron structure found in the functional gene. However, it does contain an intact open reading frame and it has not been established that the predicted protein is not translated. The NCBI RefSeq Project continues to treat this as a protein coding gene in agreement with Swiss-Prot. [provided by RefSeq, Jan 2014]

GeneCards Summary for DPH3P1 Gene

DPH3P1 (Diphthamide Biosynthesis 3 Pseudogene 1) is a Protein Coding gene.

Additional gene information for DPH3P1 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DPH3P1 Gene

Genomics for DPH3P1 Gene

GeneHancer (GH) Regulatory Elements for DPH3P1 Gene

Promoters and enhancers for DPH3P1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20J062500 Enhancer 1.6 FANTOM5 Ensembl ENCODE 7.2 -342.9 -342943 2.8 HDGF PKNOX1 SMAD1 ARNT ARID4B NEUROD1 SIN3A YBX1 ZNF2 ZBTB7B DIDO1 TAF4 ENSG00000226332 MRGBP RPS21 LAMA5 HAR1A MTG2 YTHDF1 DPH3P1
GH20J062588 Enhancer 0.9 FANTOM5 ENCODE dbSUPER 5.7 -256.3 -256297 0.2 SIN3A REST SMARCB1 DPH3P1 OGFR ENSG00000264490 WI2-87327B8.2
GH20J062738 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 3.2 -103.9 -103882 4.9 ATF1 PKNOX1 SIN3A IRF4 ZNF766 GLIS2 ELK1 ZNF143 ATF7 FOS OGFR NTSR1 LINC00659 LINC00686 OGFR-AS1 MIR1-1HG-AS1 MIR1-1 MIR1-1HG ENSG00000229882 ENSG00000232121
GH20J062793 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 1.9 -48.7 -48740 5 HDGF CLOCK SMAD1 MLX ARNT ZFP64 ARID4B SIN3A DMAP1 ZBTB7B MRGBP LOC105372716 DIDO1 OGFR YTHDF1 RPS21 LSM14B LAMA5 TAF4 RTEL1
GH20J062649 Promoter/Enhancer 2.1 FANTOM5 Ensembl ENCODE dbSUPER 2 -192.5 -192474 4.7 HDGF PKNOX1 CLOCK FOXA2 SMAD1 MLX ARID4B NEUROD1 SIN3A FEZF1 ENSG00000276317 ENSG00000277496 OGFR YTHDF1 OGFR-AS1 MTG2 MIR1-1 MIR1-1HG MIR1-1HG-AS1 DIDO1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around DPH3P1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for DPH3P1 Gene

Genomic Locations for DPH3P1 Gene
chr20:62,844,566-62,846,191
(GRCh38/hg38)
Size:
1,626 bases
Orientation:
Plus strand
chr20:61,476,476-61,477,543
(GRCh37/hg19)

Genomic View for DPH3P1 Gene

Genes around DPH3P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
DPH3P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DPH3P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DPH3P1 Gene

Proteins for DPH3P1 Gene

  • Protein details for DPH3P1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9H4G8-DPH3B_HUMAN
    Recommended name:
    Putative DPH3 homolog B
    Protein Accession:
    Q9H4G8

    Protein attributes for DPH3P1 Gene

    Size:
    78 amino acids
    Molecular mass:
    8721 Da
    Quaternary structure:
    No Data Available

neXtProt entry for DPH3P1 Gene

Post-translational modifications for DPH3P1 Gene

No Post-translational modifications

Other Protein References for DPH3P1 Gene

REFSEQ proteins:

No data available for DME Specific Peptides for DPH3P1 Gene

Domains & Families for DPH3P1 Gene

Protein Domains for DPH3P1 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for DPH3P1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9H4G8

UniProtKB/Swiss-Prot:

DPH3B_HUMAN :
  • Belongs to the DPH3 family.
Family:
  • Belongs to the DPH3 family.
genes like me logo Genes that share domains with DPH3P1: view

No data available for Gene Families for DPH3P1 Gene

Function for DPH3P1 Gene

Gene Ontology (GO) - Molecular Function for DPH3P1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0009055 electron transfer activity IBA --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with DPH3P1: view

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for DPH3P1 Gene

Localization for DPH3P1 Gene

Gene Ontology (GO) - Cellular Components for DPH3P1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IBA --
GO:0005829 cytosol IBA --
genes like me logo Genes that share ontologies with DPH3P1: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for DPH3P1 Gene

Pathways & Interactions for DPH3P1 Gene

SuperPathways for DPH3P1 Gene

No Data Available

Interacting Proteins for DPH3P1 Gene

Gene Ontology (GO) - Biological Process for DPH3P1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0017183 peptidyl-diphthamide biosynthetic process from peptidyl-histidine IBA --
genes like me logo Genes that share ontologies with DPH3P1: view

No data available for Pathways by source and SIGNOR curated interactions for DPH3P1 Gene

Drugs & Compounds for DPH3P1 Gene

No Compound Related Data Available

Transcripts for DPH3P1 Gene

mRNA/cDNA for DPH3P1 Gene

(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for DPH3P1 Gene

No ASD Table

Relevant External Links for DPH3P1 Gene

GeneLoc Exon Structure for
DPH3P1
ECgene alternative splicing isoforms for
DPH3P1

Expression for DPH3P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for DPH3P1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for DPH3P1 Gene

This gene is overexpressed in Brain - Spinal cord (cervical c-1) (x5.5).

NURSA nuclear receptor signaling pathways regulating expression of DPH3P1 Gene:

DPH3P1
genes like me logo Genes that share expression patterns with DPH3P1: view

No data available for Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for DPH3P1 Gene

Orthologs for DPH3P1 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for DPH3P1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia DPH3P1 33
  • 100 (n)
Species where no ortholog for DPH3P1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for DPH3P1 Gene

ENSEMBL:
Gene Tree for DPH3P1 (if available)
TreeFam:
Gene Tree for DPH3P1 (if available)

Paralogs for DPH3P1 Gene

(2) SIMAP similar genes for DPH3P1 Gene using alignment to 1 proteins:

  • DPH3B_HUMAN
genes like me logo Genes that share paralogs with DPH3P1: view

No data available for Paralogs for DPH3P1 Gene

Variants for DPH3P1 Gene

Sequence variations from dbSNP and Humsavar for DPH3P1 Gene

SNP ID Clin Chr 20 pos Variation AA Info Type
rs1000201449 -- 62,844,707(+) T/C 5_prime_UTR_variant
rs1000444034 -- 62,845,294(+) G/A 5_prime_UTR_variant
rs1000481588 -- 62,844,985(+) T/C 5_prime_UTR_variant
rs1000535541 -- 62,845,891(+) C/T coding_sequence_variant, synonymous_variant
rs1000818601 -- 62,846,138(+) A/G 3_prime_UTR_variant

Structural Variations from Database of Genomic Variants (DGV) for DPH3P1 Gene

Variant ID Type Subtype PubMed ID
nsv428380 CNV loss 18775914
nsv828794 CNV loss 20364138
nsv834027 CNV loss 17160897
nsv9825 CNV gain 18304495

Additional Variant Information for DPH3P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
DPH3P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for DPH3P1 Gene

Disorders for DPH3P1 Gene

Additional Disease Information for DPH3P1

No disorders were found for DPH3P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for DPH3P1 Gene

Publications for DPH3P1 Gene

  1. The DNA sequence and comparative analysis of human chromosome 20. (PMID: 11780052) Deloukas P … Rogers J (Nature 2001) 3 4 58
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. (PMID: 21873635) Gaudet P … Thomas PD (Briefings in bioinformatics 2011) 3

Products for DPH3P1 Gene

Sources for DPH3P1 Gene

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