Aliases for DNMT3L-AS1 Gene

Subcategory (RNA class) for DNMT3L-AS1 Gene

lncRNA

Number of RNA Genes sources:

2 / 14

Aliases for DNMT3L-AS1 Gene

  • DNMT3L Antisense RNA 1 2 3
  • Novel Transcript 5
  • NONHSAG033020 92
  • HSALNG0133518 167
  • AP001059.1 5
  • DNMT3L-AS1 2

External Ids for DNMT3L-AS1 Gene

Summaries for DNMT3L-AS1 Gene

GeneCards Summary for DNMT3L-AS1 Gene

DNMT3L-AS1 (DNMT3L Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for DNMT3L-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for DNMT3L-AS1 Gene

Genomics for DNMT3L-AS1 Gene

GeneHancer (GH) Regulatory Elements for DNMT3L-AS1 Gene

Promoters and enhancers for DNMT3L-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21J044239 Promoter/Enhancer 2.2 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 500.7 -1.9 -1932 7.3 EP300 FOXK2 ZNF217 CTCF SIN3A POLR2G SP1 NCOR1 ZNF639 ZNF10 ICOSLG DNMT3L-AS1 ENSG00000275799 ENSG00000278158 UBE2G2 HSF2BP PWP2 ENSG00000184441 CFAP410 TRAPPC10
GH21J044247 Promoter/Enhancer 1.7 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.7 +4.2 4185 4 EP300 FOXK2 ZNF217 POLR2G NCOR1 KDM6A TCF7 AFF1 CTCF REST UBE2G2 RRP1B PWP2 TRAPPC10 ENSG00000184441 ICOSLG DNMT3L-AS1 lnc-AIRE-5 DNMT3L
GH21J044254 Enhancer 0.6 Ensembl 0.4 +10.0 9997 1.6 ZIC2 REST CTCF CREB3L1 ZFHX2 FOXA1 KLF17 KLF1 CREM L3MBTL2 ICOSLG DNMT3L-AS1 lnc-AIRE-5 DNMT3L
GH21J044252 Enhancer 0.6 Ensembl ENCODE 0.4 +7.0 6998 0.8 JUND CUX1 KAT2B HNRNPL ICOSLG DNMT3L-AS1 lnc-AIRE-5 DNMT3L
GH21J044261 Promoter 0.6 EPDnew 0.4 +16.9 16884 0.1 KLF8 EGR1 VEZF1 KLF1 EGR2 lnc-AIRE-5 DNMT3L DNMT3L-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around DNMT3L-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for DNMT3L-AS1 Gene

Genomic Locations for DNMT3L-AS1 Gene
chr21:44,245,003-44,252,881
(GRCh38/hg38)
Size:
7,879 bases
Orientation:
Plus strand
chr21:45,670,696-45,671,403
(GRCh37/hg19)
Size:
708 bases
Orientation:
Plus strand

Genomic View for DNMT3L-AS1 Gene

Genes around DNMT3L-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
DNMT3L-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DNMT3L-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DNMT3L-AS1 Gene

Proteins for DNMT3L-AS1 Gene

Post-translational modifications for DNMT3L-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for DNMT3L-AS1 Gene

Domains & Families for DNMT3L-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for DNMT3L-AS1 Gene

Function for DNMT3L-AS1 Gene

Phenotypes From GWAS Catalog for DNMT3L-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for DNMT3L-AS1 Gene

Localization for DNMT3L-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for DNMT3L-AS1 Gene

Pathways & Interactions for DNMT3L-AS1 Gene

PathCards logo

SuperPathways for DNMT3L-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for DNMT3L-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for DNMT3L-AS1 Gene

Drugs & Compounds for DNMT3L-AS1 Gene

No Compound Related Data Available

Transcripts for DNMT3L-AS1 Gene

mRNA/cDNA for DNMT3L-AS1 Gene

4 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 NONCODE transcripts :
2 LncBook transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for DNMT3L-AS1 Gene

No ASD Table

Relevant External Links for DNMT3L-AS1 Gene

GeneLoc Exon Structure for
DNMT3L-AS1

Expression for DNMT3L-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for DNMT3L-AS1 Gene

Orthologs for DNMT3L-AS1 Gene

Evolution for DNMT3L-AS1 Gene

ENSEMBL:
Gene Tree for DNMT3L-AS1 (if available)
TreeFam:
Gene Tree for DNMT3L-AS1 (if available)

No data available for Orthologs for DNMT3L-AS1 Gene

Paralogs for DNMT3L-AS1 Gene

No data available for Paralogs for DNMT3L-AS1 Gene

Variants for DNMT3L-AS1 Gene

Additional dbSNP identifiers (rs#s) for DNMT3L-AS1 Gene

Additional Variant Information for DNMT3L-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
DNMT3L-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for DNMT3L-AS1 Gene

Disorders for DNMT3L-AS1 Gene

No disorders were found for DNMT3L-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for DNMT3L-AS1 Gene

Publications for DNMT3L-AS1 Gene

No publications were found for DNMT3L-AS1 Gene.

No data available for Mastermind for DNMT3L-AS1 Gene

Products for DNMT3L-AS1 Gene

Sources for DNMT3L-AS1 Gene