Aliases for DNM3-IT1 Gene

Subcategory (RNA class) for DNM3-IT1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for DNM3-IT1 Gene

  • DNM3 Intronic Transcript 1 2 3 5
  • DNM3 Intronic Transcript 1 (Non-Protein Coding) 2 3
  • DNM3-IT1 2 168
  • HSALNG0008458 167
  • NONHSAG003466 92

External Ids for DNM3-IT1 Gene

Previous GeneCards Identifiers for DNM3-IT1 Gene

  • GC00U933770
  • GC01P171834

Summaries for DNM3-IT1 Gene

GeneCards Summary for DNM3-IT1 Gene

DNM3-IT1 (DNM3 Intronic Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for DNM3-IT1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for DNM3-IT1 Gene

Genomics for DNM3-IT1 Gene

GeneHancer (GH) Regulatory Elements for DNM3-IT1 Gene

Promoters and enhancers for DNM3-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J171863 Enhancer 0.2 FANTOM5 500.7 -1.1 -1087 0.1 DNM3-IT1 DNM3 lnc-METTL13-5
GH01J171840 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE CraniofacialAtlas 6.5 -22.3 -22286 3 TCF12 NRF1 ZBTB10 POLR2A ZBTB11 ZBTB26 SAP30 ZEB1 HDAC2 MXI1 DNM3 lnc-VAMP4-5 DNM3-IT1 lnc-METTL13-5
GH01J171898 Enhancer 0.8 Ensembl ENCODE CraniofacialAtlas 6.4 +35.2 35214 1.6 EP300 USF1 POLR2A FOXP2 CTCF TAF1 MAX DNM3-IT1 DNM3 RF00017-395 piR-48369-007
GH01J171908 Enhancer 0.7 Ensembl ENCODE 6.7 +46.3 46307 3.2 TEAD4 REST MIER1 HDAC2 EHMT2 SIN3A GLIS1 MIER2 POU5F1 NANOG DNM3-IT1 DNM3 RF00017-395 piR-48369-007
GH01J171904 Enhancer 0.6 Ensembl 6.4 +40.9 40914 0.6 CREB1 ZNF316 MAFF TRIM24 CEBPG MAFK CEBPB NFE2 ZNF318 NFE2L1 DNM3-IT1 RF00017-395 piR-48369-007 DNM3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around DNM3-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for DNM3-IT1 Gene

Genomic Locations for DNM3-IT1 Gene
chr1:171,864,187-171,864,688
(GRCh38/hg38)
Size:
502 bases
Orientation:
Plus strand
chr1:171,833,327-171,833,827
(GRCh37/hg19)
Size:
501 bases
Orientation:
Plus strand

Genomic View for DNM3-IT1 Gene

Genes around DNM3-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
DNM3-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DNM3-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DNM3-IT1 Gene

Proteins for DNM3-IT1 Gene

Post-translational modifications for DNM3-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for DNM3-IT1 Gene

Domains & Families for DNM3-IT1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for DNM3-IT1 Gene

Function for DNM3-IT1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for DNM3-IT1 Gene

Localization for DNM3-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for DNM3-IT1 Gene

Pathways & Interactions for DNM3-IT1 Gene

PathCards logo

SuperPathways for DNM3-IT1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for DNM3-IT1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for DNM3-IT1 Gene

Drugs & Compounds for DNM3-IT1 Gene

No Compound Related Data Available

Transcripts for DNM3-IT1 Gene

mRNA/cDNA for DNM3-IT1 Gene

3 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 NONCODE transcripts :
2 LncBook transcripts :
2 LNCipedia transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for DNM3-IT1 Gene

No ASD Table

Relevant External Links for DNM3-IT1 Gene

GeneLoc Exon Structure for
DNM3-IT1

Expression for DNM3-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for DNM3-IT1 Gene

mRNA differential expression in normal tissues according to GTEx for DNM3-IT1 Gene

This gene is overexpressed in Testis (x26.8).
genes like me logo Genes that share expression patterns with DNM3-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for DNM3-IT1 Gene

Orthologs for DNM3-IT1 Gene

Evolution for DNM3-IT1 Gene

ENSEMBL:
Gene Tree for DNM3-IT1 (if available)
TreeFam:
Gene Tree for DNM3-IT1 (if available)

No data available for Orthologs for DNM3-IT1 Gene

Paralogs for DNM3-IT1 Gene

No data available for Paralogs for DNM3-IT1 Gene

Variants for DNM3-IT1 Gene

Additional dbSNP identifiers (rs#s) for DNM3-IT1 Gene

Additional Variant Information for DNM3-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
DNM3-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for DNM3-IT1 Gene

Disorders for DNM3-IT1 Gene

Additional Disease Information for DNM3-IT1

No disorders were found for DNM3-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for DNM3-IT1 Gene

Publications for DNM3-IT1 Gene

No publications were found for DNM3-IT1 Gene.

No data available for Mastermind for DNM3-IT1 Gene

Products for DNM3-IT1 Gene

Sources for DNM3-IT1 Gene