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Aliases for DNM3-IT1 Gene

Subcategory (RNA class) for DNM3-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for DNM3-IT1 Gene

  • DNM3 Intronic Transcript 1 2 3 5
  • DNM3 Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for DNM3-IT1 Gene

Previous GeneCards Identifiers for DNM3-IT1 Gene

  • GC00U933770
  • GC01P171834

Summaries for DNM3-IT1 Gene

GeneCards Summary for DNM3-IT1 Gene

DNM3-IT1 (DNM3 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for DNM3-IT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DNM3-IT1 Gene

Genomics for DNM3-IT1 Gene

GeneHancer (GH) Regulatory Elements for DNM3-IT1 Gene

Promoters and enhancers for DNM3-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I171863 Enhancer 0.3 FANTOM5 550.8 -1.1 -1087 0.1 DNM3-IT1 DNM3
GH01I171840 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE 6.5 -22.5 -22511 2.2 HDGF SIN3A FEZF1 ZNF2 ZNF121 GLIS2 ZNF213 ZNF143 SP3 REST DNM3 DNM3-IT1
GH01I171898 Enhancer 0.6 Ensembl ENCODE 6.3 +35.2 35197 1.2 USF1 POLR2A MAX DNM3-IT1 DNM3 GC01M171926
GH01I171908 Enhancer 0.5 ENCODE 6.7 +46.3 46307 3.2 GLIS1 POU5F1 ZNF143 BACH1 SIN3A MIER2 REST DNM3-IT1 DNM3 GC01M171926
GH01I171914 Enhancer 0.5 ENCODE 0.2 +49.4 49389 0.2 SP1 JUND NFE2 NFE2L2 DNM3-IT1 DNM3 GC01M171926
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around DNM3-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for DNM3-IT1 Gene

Genomic Locations for DNM3-IT1 Gene
chr1:171,864,187-171,864,687
(GRCh38/hg38)
Size:
501 bases
Orientation:
Plus strand
chr1:171,833,327-171,833,827
(GRCh37/hg19)

Genomic View for DNM3-IT1 Gene

Genes around DNM3-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
DNM3-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DNM3-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DNM3-IT1 Gene

Proteins for DNM3-IT1 Gene

Post-translational modifications for DNM3-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for DNM3-IT1 Gene

Domains & Families for DNM3-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for DNM3-IT1 Gene

Function for DNM3-IT1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for DNM3-IT1 Gene

Localization for DNM3-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for DNM3-IT1 Gene

Pathways & Interactions for DNM3-IT1 Gene

SuperPathways for DNM3-IT1 Gene

No Data Available

Interacting Proteins for DNM3-IT1 Gene

Gene Ontology (GO) - Biological Process for DNM3-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for DNM3-IT1 Gene

Drugs & Compounds for DNM3-IT1 Gene

No Compound Related Data Available

Transcripts for DNM3-IT1 Gene

mRNA/cDNA for DNM3-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for DNM3-IT1 Gene

No ASD Table

Relevant External Links for DNM3-IT1 Gene

GeneLoc Exon Structure for
DNM3-IT1
ECgene alternative splicing isoforms for
DNM3-IT1

Expression for DNM3-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for DNM3-IT1 Gene

mRNA differential expression in normal tissues according to GTEx for DNM3-IT1 Gene

This gene is overexpressed in Testis (x26.8).
genes like me logo Genes that share expression patterns with DNM3-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for DNM3-IT1 Gene

Orthologs for DNM3-IT1 Gene

Evolution for DNM3-IT1 Gene

ENSEMBL:
Gene Tree for DNM3-IT1 (if available)
TreeFam:
Gene Tree for DNM3-IT1 (if available)

No data available for Orthologs for DNM3-IT1 Gene

Paralogs for DNM3-IT1 Gene

No data available for Paralogs for DNM3-IT1 Gene

Variants for DNM3-IT1 Gene

Sequence variations from dbSNP and Humsavar for DNM3-IT1 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1001848118 -- 171,864,900(+) A/G downstream_transcript_variant
rs1003782469 -- 171,863,762(+) C/G upstream_transcript_variant
rs1003842318 -- 171,865,003(+) C/T downstream_transcript_variant
rs1004622824 -- 171,863,381(+) T/A upstream_transcript_variant
rs1008659653 -- 171,864,583(+) G/C non_coding_transcript_variant

Additional Variant Information for DNM3-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
DNM3-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for DNM3-IT1 Gene

Disorders for DNM3-IT1 Gene

Additional Disease Information for DNM3-IT1

No disorders were found for DNM3-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for DNM3-IT1 Gene

Publications for DNM3-IT1 Gene

No publications were found for DNM3-IT1 Gene.

Products for DNM3-IT1 Gene

Sources for DNM3-IT1 Gene

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