Aliases for DNAH17-AS1 Gene

Subcategory (RNA class) for DNAH17-AS1 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for DNAH17-AS1 Gene

  • DNAH17 Antisense RNA 1 2 3 5
  • HSALNG0119037 169
  • NONHSAG022893 94
  • DNAH17-AS1 2

External Ids for DNAH17-AS1 Gene

Previous GeneCards Identifiers for DNAH17-AS1 Gene

  • GC17P076494

Summaries for DNAH17-AS1 Gene

GeneCards Summary for DNAH17-AS1 Gene

DNAH17-AS1 (DNAH17 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for DNAH17-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for DNAH17-AS1 Gene

Genomics for DNAH17-AS1 Gene

GeneHancer (GH) Regulatory Elements for DNAH17-AS1 Gene

Promoters and enhancers for DNAH17-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J078484 Promoter/Enhancer 1.7 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 750.6 +0.1 54 1.9 SIN3A POLR2A USF2 MNT ZIC2 ZNF740 ZFX MAX SP1 MXI1 DNAH17-AS1 RNU6-638P TMEM235 RF00017-2571 DNAH17
GH17J078496 Enhancer 1.3 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 +12.6 12618 3.8 CTCF RBPJ CC2D1A HLF RAD21 ZNF652 AHR MAFK ELF1 ZSCAN21 USP36 RNU6-638P ENGASE DNAH17-AS1 RF00017-2571 DNAH17
GH17J078493 Enhancer 0.7 Ensembl dbSUPER 0.4 +8.7 8719 1.2 TFE3 GLIS2 SOX13 TGIF2 POLR2A SAP130 ZGPAT ARID4B DNAH17-AS1 RF00017-2571 DNAH17
GH17J078474 Enhancer 0.7 ENCODE 0.4 -10.0 -10017 1.2 ZNF24 SP1 HCFC1 RELA L3MBTL2 MLLT1 ZNF687 CREM IKZF1 BACH1 TMC8 piR-60597-033 DNAH17-AS1 DNAH17
GH17J078466 Enhancer 0.4 dbSUPER 0.4 -17.9 -17949 0.9 SOX13 SMAD4 BCL6 piR-42688-013 piR-43583-236 piR-60597-033 DNAH17-AS1 DNAH17
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around DNAH17-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for DNAH17-AS1 Gene

Genomic Locations for DNAH17-AS1 Gene
chr17:78,484,882-78,503,056
(GRCh38/hg38)
Size:
18,175 bases
Orientation:
Plus strand
chr17:76,494,911-76,499,138
(GRCh37/hg19)
Size:
4,228 bases
Orientation:
Plus strand

Genomic View for DNAH17-AS1 Gene

Genes around DNAH17-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
DNAH17-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DNAH17-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DNAH17-AS1 Gene

Proteins for DNAH17-AS1 Gene

Post-translational modifications for DNAH17-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for DNAH17-AS1 Gene

Domains & Families for DNAH17-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for DNAH17-AS1 Gene

Function for DNAH17-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for DNAH17-AS1 Gene

Localization for DNAH17-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for DNAH17-AS1 Gene

Pathways & Interactions for DNAH17-AS1 Gene

PathCards logo

SuperPathways for DNAH17-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for DNAH17-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for DNAH17-AS1 Gene

Drugs & Compounds for DNAH17-AS1 Gene

No Compound Related Data Available

Transcripts for DNAH17-AS1 Gene

mRNA/cDNA for DNAH17-AS1 Gene

(1) REFSEQ mRNAs :
(5) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(5) RNACentral transcripts :
(4) NONCODE transcripts :
(4) LncBook transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for DNAH17-AS1 Gene

No ASD Table

Relevant External Links for DNAH17-AS1 Gene

GeneLoc Exon Structure for
DNAH17-AS1
ECgene alternative splicing isoforms for
DNAH17-AS1

Expression for DNAH17-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for DNAH17-AS1 Gene

genes like me logo Genes that share expression patterns with DNAH17-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for DNAH17-AS1 Gene

Orthologs for DNAH17-AS1 Gene

Evolution for DNAH17-AS1 Gene

ENSEMBL:
Gene Tree for DNAH17-AS1 (if available)
TreeFam:
Gene Tree for DNAH17-AS1 (if available)

No data available for Orthologs for DNAH17-AS1 Gene

Paralogs for DNAH17-AS1 Gene

No data available for Paralogs for DNAH17-AS1 Gene

Variants for DNAH17-AS1 Gene

Sequence variations from dbSNP and Humsavar for DNAH17-AS1 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs763505389 likely-pathogenic, Short stature 78,491,549(+) C/T intron_variant
rs376047406 likely-benign, not specified 78,501,847(+) C/A/T non_coding_transcript_variant
rs11077375 benign, not specified 78,495,112(+) G/A/T intron_variant
rs11872051 benign, not specified 78,485,611(+) C/A/G/T intron_variant
rs2028734 benign, not specified 78,500,410(+) A/G non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for DNAH17-AS1 Gene

Variant ID Type Subtype PubMed ID
esv995150 CNV deletion 20482838
nsv470609 CNV loss 18288195
nsv524975 CNV loss 19592680
nsv576097 CNV loss 21841781

Variation tolerance for DNAH17-AS1 Gene

Gene Damage Index Score: 22.42; 99.43% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for DNAH17-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
DNAH17-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for DNAH17-AS1 Gene

Disorders for DNAH17-AS1 Gene

Additional Disease Information for DNAH17-AS1

No disorders were found for DNAH17-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for DNAH17-AS1 Gene

Publications for DNAH17-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 56

Products for DNAH17-AS1 Gene

Sources for DNAH17-AS1 Gene