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Aliases for DNAAF4-CCPG1 Gene

Subcategory (RNA class) for DNAAF4-CCPG1 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for DNAAF4-CCPG1 Gene

  • DNAAF4-CCPG1 Readthrough (NMD Candidate) 2 3 5
  • DYX1C1-CCPG1 Readthrough (NMD Candidate) 2 3
  • DYX1C1-CCPG1 Readthrough (Non-Protein Coding) 3
  • DYX1C1-CCPG1 3

External Ids for DNAAF4-CCPG1 Gene

Previous HGNC Symbols for DNAAF4-CCPG1 Gene

  • DYX1C1-CCPG1

Previous GeneCards Identifiers for DNAAF4-CCPG1 Gene

  • GC15M055830
  • GC15M056265
  • GC15M056714

Summaries for DNAAF4-CCPG1 Gene

Entrez Gene Summary for DNAAF4-CCPG1 Gene

  • This locus represents naturally occurring read-through transcription between the neighboring dyslexia susceptibility 1 candidate 1 (DYX1C1) and cell cycle progression 1 (CCPG1) genes on chromosome 15. The read-through transcript is a candidate for nonsense-mediated mRNA decay (NMD), and is thus unlikely to produce a protein product. [provided by RefSeq, Mar 2011]

GeneCards Summary for DNAAF4-CCPG1 Gene

DNAAF4-CCPG1 (DNAAF4-CCPG1 Readthrough (NMD Candidate)) is an RNA Gene, and is affiliated with the ncRNA class. Diseases associated with DNAAF4-CCPG1 include Dyslexia 1 and Dyslexia.

Additional gene information for DNAAF4-CCPG1 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DNAAF4-CCPG1 Gene

Genomics for DNAAF4-CCPG1 Gene

GeneHancer (GH) Regulatory Elements for DNAAF4-CCPG1 Gene

Promoters and enhancers for DNAAF4-CCPG1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15J055497 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE 650.7 +0.2 214 1.5 ARID4B SIN3A DMAP1 ZNF2 ZNF48 YY1 GTF3C2 ZNF143 MXD4 ZNF518A DNAAF4 DNAAF4-CCPG1 RFX7 RSL24D1 PYGO1 C15orf65 PIGB LOC100420711
GH15J055401 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 0.2 +93.0 93025 7.7 HDGF PKNOX1 CLOCK ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 POLR2B C15orf65 CCPG1 RSL24D1 RFX7 NEDD4 PYGO1 DNAAF4 PIGBOS1 PIGB GC15M057886
GH15J055494 Enhancer 0.2 Ensembl 0.7 +3.7 3683 0.2 RSL24D1 DNAAF4-CCPG1 DNAAF4 LOC100420711
GH15J055495 Enhancer 0.2 ENCODE 0.7 +3.4 3446 0.2 RSL24D1 DNAAF4-CCPG1 DNAAF4 LOC100420711
GH15J055496 Enhancer 0.2 Ensembl 0.7 +3.1 3084 0.2 RSL24D1 RAB27A DNAAF4-CCPG1 DNAAF4 LOC100420711
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around DNAAF4-CCPG1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for DNAAF4-CCPG1 Gene

Genomic Locations for DNAAF4-CCPG1 Gene
chr15:55,355,223-55,498,584
(GRCh38/hg38)
Size:
143,362 bases
Orientation:
Minus strand
chr15:55,647,421-55,790,782
(GRCh37/hg19)

Genomic View for DNAAF4-CCPG1 Gene

Genes around DNAAF4-CCPG1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
DNAAF4-CCPG1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DNAAF4-CCPG1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DNAAF4-CCPG1 Gene

Proteins for DNAAF4-CCPG1 Gene

Post-translational modifications for DNAAF4-CCPG1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for DNAAF4-CCPG1 Gene

Domains & Families for DNAAF4-CCPG1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for DNAAF4-CCPG1 Gene

Function for DNAAF4-CCPG1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for DNAAF4-CCPG1 Gene

Localization for DNAAF4-CCPG1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for DNAAF4-CCPG1 Gene

Pathways & Interactions for DNAAF4-CCPG1 Gene

SuperPathways for DNAAF4-CCPG1 Gene

No Data Available

Interacting Proteins for DNAAF4-CCPG1 Gene

Gene Ontology (GO) - Biological Process for DNAAF4-CCPG1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for DNAAF4-CCPG1 Gene

Drugs & Compounds for DNAAF4-CCPG1 Gene

No Compound Related Data Available

Transcripts for DNAAF4-CCPG1 Gene

mRNA/cDNA for DNAAF4-CCPG1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for DNAAF4-CCPG1 Gene

No ASD Table

Relevant External Links for DNAAF4-CCPG1 Gene

GeneLoc Exon Structure for
DNAAF4-CCPG1
ECgene alternative splicing isoforms for
DNAAF4-CCPG1

Expression for DNAAF4-CCPG1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for DNAAF4-CCPG1 Gene

Orthologs for DNAAF4-CCPG1 Gene

Evolution for DNAAF4-CCPG1 Gene

ENSEMBL:
Gene Tree for DNAAF4-CCPG1 (if available)
TreeFam:
Gene Tree for DNAAF4-CCPG1 (if available)

No data available for Orthologs for DNAAF4-CCPG1 Gene

Paralogs for DNAAF4-CCPG1 Gene

No data available for Paralogs for DNAAF4-CCPG1 Gene

Variants for DNAAF4-CCPG1 Gene

Sequence variations from dbSNP and Humsavar for DNAAF4-CCPG1 Gene

SNP ID Clin Chr 15 pos Variation AA Info Type
rs1060503094 uncertain-significance, Primary ciliary dyskinesia 55,430,708(-) T/A intron_variant
rs1060503095 pathogenic, Primary ciliary dyskinesia 55,497,816(-) GGA/AG non_coding_transcript_variant
rs1060503096 uncertain-significance, Primary ciliary dyskinesia 55,435,056(-) T/C non_coding_transcript_variant
rs114245686 uncertain-significance, Primary ciliary dyskinesia 55,497,786(-) A/G non_coding_transcript_variant
rs116339967 uncertain-significance, Primary ciliary dyskinesia 55,439,484(-) T/A non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for DNAAF4-CCPG1 Gene

Variant ID Type Subtype PubMed ID
dgv1216n106 CNV deletion 24896259
dgv437n67 CNV loss 20364138
dgv4544n54 CNV loss 21841781
dgv4545n54 CNV loss 21841781
dgv4546n54 CNV loss 21841781
dgv4547n54 CNV loss 21841781
esv2663013 CNV deletion 23128226
esv2749724 CNV deletion 23290073
esv2761899 CNV gain+loss 21179565
esv29128 CNV loss 19812545
esv3365892 CNV insertion 20981092
esv3373880 CNV insertion 20981092
esv3390087 CNV insertion 20981092
esv3552487 CNV deletion 23714750
esv3569598 CNV gain 25503493
esv3636557 CNV loss 21293372
esv3636558 CNV loss 21293372
esv3636560 CNV loss 21293372
esv3636562 CNV loss 21293372
esv3636564 CNV loss 21293372
esv3636565 CNV loss 21293372
esv3892697 CNV loss 25118596
esv9731 CNV loss 19470904
nsv1043789 CNV gain 25217958
nsv1113713 CNV deletion 24896259
nsv1542 CNV insertion 18451855
nsv475201 CNV novel sequence insertion 20440878
nsv520799 CNV loss 19592680
nsv569523 CNV gain 21841781
nsv569530 CNV loss 21841781
nsv569539 CNV loss 21841781
nsv817693 CNV loss 17921354
nsv833016 CNV gain 17160897
nsv951964 CNV deletion 24416366
nsv984074 CNV duplication 23825009

Additional Variant Information for DNAAF4-CCPG1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
DNAAF4-CCPG1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for DNAAF4-CCPG1 Gene

Disorders for DNAAF4-CCPG1 Gene

MalaCards: The human disease database

(2) MalaCards diseases for DNAAF4-CCPG1 Gene - From: GeneCards

Disorder Aliases PubMed IDs
dyslexia 1
  • dyslexia, susceptibility to, 1
dyslexia
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with DNAAF4-CCPG1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for DNAAF4-CCPG1 Gene

Publications for DNAAF4-CCPG1 Gene

  1. Expression of conjoined genes: another mechanism for gene regulation in eukaryotes. (PMID: 20967262) Prakash T … Taylor TD (PloS one 2010) 3 58
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for DNAAF4-CCPG1 Gene

Sources for DNAAF4-CCPG1 Gene

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