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Aliases for DNAAF3 Gene

Aliases for DNAAF3 Gene

  • Dynein Axonemal Assembly Factor 3 2 3 5
  • C19orf51 3 4
  • Chromosome 19 Open Reading Frame 51 2
  • Dynein, Axonemal, Assembly Factor 3 2
  • Dynein (Axonemal) Assembly Factor 3 2
  • Dynein Assembly Factor 3, Axonemal 3
  • Ciliary Dyskinesia, Primary 2 2
  • UPF0470 Protein C19orf51 3
  • CILD2 3
  • DAB1 3
  • PF22 3
  • PCD 3

External Ids for DNAAF3 Gene

Previous HGNC Symbols for DNAAF3 Gene

  • C19orf51
  • CILD2

Previous GeneCards Identifiers for DNAAF3 Gene

  • GC19M055671

Summaries for DNAAF3 Gene

Entrez Gene Summary for DNAAF3 Gene

  • The protein encoded by this gene is required for the assembly of axonemal inner and outer dynein arms and plays a role in assembling dynein complexes for transport into cilia. Defects in this gene are a cause of primary ciliary dyskinesia type 2 (CILD2). Several transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, May 2012]

GeneCards Summary for DNAAF3 Gene

DNAAF3 (Dynein Axonemal Assembly Factor 3) is a Protein Coding gene. Diseases associated with DNAAF3 include Ciliary Dyskinesia, Primary, 2 and Kartagener Syndrome. An important paralog of this gene is ENSG00000267110.

UniProtKB/Swiss-Prot for DNAAF3 Gene

  • Required for the assembly of axonemal inner and outer dynein arms. Involved in preassembly of dyneins into complexes before their transport into cilia.

Additional gene information for DNAAF3 Gene

No data available for CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DNAAF3 Gene

Genomics for DNAAF3 Gene

GeneHancer (GH) Regulatory Elements for DNAAF3 Gene

Promoters and enhancers for DNAAF3 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19I055166 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 570.7 -0.2 -203 1.9 HDGF PKNOX1 ARNT ARID4B NEUROD1 SIN3A ZNF2 ZBTB7B YY1 ZNF766 DNAAF3 ENSG00000239137 U2AF2 ZNF628 ZNF581 LENG8 ENSG00000235681 ENSG00000267523 LENG8-AS1 ENSG00000267096
GH19I055382 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 10.8 -220.1 -220142 8.2 HDGF PKNOX1 SMAD1 ARNT ARID4B SIN3A DMAP1 YY1 POLR2B ZNF213 RPL28 MIR6805 PIR44435 TMEM238 ZNF628 LENG8-AS1 ZNF581 U2AF2 COX6B2 BRSK1
GH19I055215 Promoter/Enhancer 1.9 Ensembl ENCODE dbSUPER 11.1 -50.0 -49983 2.9 CLOCK MLX ZFP64 DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF416 ZNF143 ENSG00000267649 LENG8-AS1 U2AF2 LENG8 ENSG00000235681 ENSG00000267523 SSC5D ZNF580 ENSG00000267096 ZNF581
GH19I055603 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 10.1 -438.6 -438563 3.9 HDGF ARNT SIN3A DMAP1 ZNF2 ZBTB7B YY1 POLR2B E2F8 ZNF143 ZNF865 ZNF580 ZNF582 ZNF471 FIZ1 ZNF542P ZFP28 ZNF470 SSC5D NAT14
GH19I055300 Promoter/Enhancer 1.4 Ensembl ENCODE 10.5 -135.1 -135125 2 SIN3A ZBTB7B POLR2B GLIS2 ZNF207 ZNF143 ATF7 RUNX3 KLF13 SP3 TMEM86B TMEM150B KMT5C HSPBP1 PPP6R1 RPL28 TMEM238 UBE2S TMEM190 ZNF628
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around DNAAF3 on UCSC Golden Path with GeneCards custom track

Genomic Locations for DNAAF3 Gene

Genomic Locations for DNAAF3 Gene
8,062 bases
Minus strand

Genomic View for DNAAF3 Gene

Genes around DNAAF3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
DNAAF3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DNAAF3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DNAAF3 Gene

Proteins for DNAAF3 Gene

  • Protein details for DNAAF3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Dynein assembly factor 3, axonemal
    Protein Accession:
    Secondary Accessions:
    • A8MUY0
    • E3W9A1
    • E9PAX5
    • Q6P4F6
    • Q8N9W0
    • Q96AR2

    Protein attributes for DNAAF3 Gene

    541 amino acids
    Molecular mass:
    59411 Da
    Quaternary structure:
    No Data Available
    • Sequence=BAC04177.1; Type=Miscellaneous discrepancy; Note=Probable cloning artifact.; Evidence={ECO:0000305};

    Alternative splice isoforms for DNAAF3 Gene


neXtProt entry for DNAAF3 Gene

Post-translational modifications for DNAAF3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for DNAAF3 Gene

Domains & Families for DNAAF3 Gene

Gene Families for DNAAF3 Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for DNAAF3 Gene


Suggested Antigen Peptide Sequences for DNAAF3 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry



  • Belongs to the DNAAF3 family.
  • Belongs to the DNAAF3 family.
genes like me logo Genes that share domains with DNAAF3: view

Function for DNAAF3 Gene

Molecular function for DNAAF3 Gene

UniProtKB/Swiss-Prot Function:
Required for the assembly of axonemal inner and outer dynein arms. Involved in preassembly of dyneins into complexes before their transport into cilia.
genes like me logo Genes that share phenotypes with DNAAF3: view

Human Phenotype Ontology for DNAAF3 Gene

HPO Id HPO Name Alternative Ids Definition Synonyms

Animal Model Products

Clone Products

No data available for Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Animal Models , Transcription Factor Targets and HOMER Transcription for DNAAF3 Gene

Localization for DNAAF3 Gene

Subcellular locations from UniProtKB/Swiss-Prot for DNAAF3 Gene


Subcellular locations from

Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for DNAAF3 gene
Compartment Confidence
mitochondrion 3
nucleus 2
cytosol 2
cytoskeleton 1
peroxisome 1

Subcellular locations from the

Human Protein Atlas (HPA)
  • Mitochondria (2)
  • Nuclear bodies (2)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for DNAAF3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IEA --
genes like me logo Genes that share ontologies with DNAAF3: view

Pathways & Interactions for DNAAF3 Gene

SuperPathways for DNAAF3 Gene

No Data Available

Interacting Proteins for DNAAF3 Gene

Selected Interacting proteins: Q8N9W5-DAAF3_HUMAN for DNAAF3 Gene via IID

Symbol External ID(s) Details

Gene Ontology (GO) - Biological Process for DNAAF3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0030030 cell projection organization IEA --
GO:0044458 motile cilium assembly IMP 22387996
GO:0070286 axonemal dynein complex assembly IMP 22387996
genes like me logo Genes that share ontologies with DNAAF3: view

No data available for Pathways by source and SIGNOR curated interactions for DNAAF3 Gene

Drugs & Compounds for DNAAF3 Gene

No Compound Related Data Available

Transcripts for DNAAF3 Gene

Unigene Clusters for DNAAF3 Gene

Dynein, axonemal, assembly factor 3:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for DNAAF3 Gene

ExUns: 1a · 1b · 1c · 1d · 1e · 1f · 1g ^ 2 ^ 3a · 3b · 3c · 3d · 3e · 3f ^ 4 ^ 5a · 5b ^ 6a · 6b · 6c · 6d · 6e ^ 7 ^ 8 ^ 9a · 9b ·
SP1: - - - - - -
SP2: - - - - - - -
SP3: - - - - -
SP4: - - - - - - - -
SP5: - - - - - - -
SP6: - - - - - -
SP7: - - - - -
SP8: - - -
SP10: -
SP11: -
SP12: - - -
SP14: -

ExUns: 9c ^ 10 ^ 11 ^ 12a · 12b ^ 13a · 13b
SP1: - -
SP2: - -
SP3: - -

Relevant External Links for DNAAF3 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for DNAAF3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for DNAAF3 Gene

mRNA differential expression in normal tissues according to GTEx for DNAAF3 Gene

This gene is overexpressed in Testis (x23.2), Heart - Left Ventricle (x7.1), and Fallopian Tube (x4.4).

Protein differential expression in normal tissues from HIPED for DNAAF3 Gene

This gene is overexpressed in Testis (34.1) and Esophagus (25.3).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for DNAAF3 Gene

Protein tissue co-expression partners for DNAAF3 Gene

NURSA nuclear receptor signaling pathways regulating expression of DNAAF3 Gene:


SOURCE GeneReport for Unigene cluster for DNAAF3 Gene:


Evidence on tissue expression from TISSUES for DNAAF3 Gene

  • Pancreas(4)
  • Nervous system(4)

Phenotype-based relationships between genes and organs from Gene ORGANizer for DNAAF3 Gene

Germ Layers:
  • ectoderm
  • endoderm
  • mesoderm
  • cardiovascular
  • digestive
  • endocrine
  • immune
  • integumentary
  • lymphatic
  • nervous
  • reproductive
  • respiratory
  • skeleton
  • urinary
Head and neck:
  • brain
  • cranial nerve
  • ear
  • epiglottis
  • eye
  • head
  • larynx
  • meninges
  • middle ear
  • mouth
  • neck
  • nose
  • olfactory bulb
  • outer ear
  • pharynx
  • sinus
  • skull
  • bronchus
  • lung
  • trachea
  • spleen
  • ovary
  • testicle
  • blood
  • blood vessel
  • peripheral nervous system
  • white blood cell
genes like me logo Genes that share expression patterns with DNAAF3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for DNAAF3 Gene

Orthologs for DNAAF3 Gene

This gene was present in the common ancestor of animals.

Orthologs for DNAAF3 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia DNAAF3 33
  • 98.52 (n)
-- 34
  • 96 (a)
(Canis familiaris)
Mammalia DNAAF3 33
  • 83.16 (n)
-- 34
  • 81 (a)
(Bos Taurus)
Mammalia DNAAF3 34
  • 77 (a)
(Rattus norvegicus)
Mammalia Dnaaf3 33
  • 76.08 (n)
(Mus musculus)
Mammalia Dnaaf3 33 16 34
  • 75.64 (n)
(Ornithorhynchus anatinus)
Mammalia -- 34
  • 53 (a)
(Anolis carolinensis)
Reptilia -- 34
  • 49 (a)
(Danio rerio)
Actinopterygii LOC100536527 33
  • 50.59 (n)
CABZ01055343.1 34
  • 37 (a)
dnaaf3 34
  • 35 (a)
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP007214 33
  • 46.51 (n)
fruit fly
(Drosophila melanogaster)
Insecta CG17669 33 34
  • 46.42 (n)
sea squirt
(Ciona savignyi)
Ascidiacea -- 34
  • 40 (a)
Species where no ortholog for DNAAF3 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for DNAAF3 Gene

Gene Tree for DNAAF3 (if available)
Gene Tree for DNAAF3 (if available)

Paralogs for DNAAF3 Gene

Paralogs for DNAAF3 Gene

genes like me logo Genes that share paralogs with DNAAF3: view

Variants for DNAAF3 Gene

Sequence variations from dbSNP and Humsavar for DNAAF3 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1039202842 uncertain-significance, Primary ciliary dyskinesia 55,161,130(-) C/G/T coding_sequence_variant, missense_variant
rs1048936417 likely-benign, Primary ciliary dyskinesia 55,162,241(-) C/T coding_sequence_variant, synonymous_variant
rs1056296743 likely-benign, Primary ciliary dyskinesia 55,162,211(-) G/A/T coding_sequence_variant, synonymous_variant
rs1060502832 uncertain-significance, Primary ciliary dyskinesia 55,161,821(-) C/A/T coding_sequence_variant, missense_variant
rs1060504731 likely-benign, Primary ciliary dyskinesia 55,159,152(-) C/T coding_sequence_variant, synonymous_variant

Structural Variations from Database of Genomic Variants (DGV) for DNAAF3 Gene

Variant ID Type Subtype PubMed ID
esv2718959 CNV deletion 23290073
esv2718958 CNV deletion 23290073

Variation tolerance for DNAAF3 Gene

Residual Variation Intolerance Score: 87.5% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 9.85; 89.66% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for DNAAF3 Gene

Human Gene Mutation Database (HGMD)
SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for DNAAF3 Gene

Disorders for DNAAF3 Gene

MalaCards: The human disease database

(5) MalaCards diseases for DNAAF3 Gene - From: HGMD, OMIM, ClinVar, GTR, Swiss-Prot, DISEASES, and GeneCards

Disorder Aliases PubMed IDs
ciliary dyskinesia, primary, 2
  • cild2
kartagener syndrome
  • kartagener's syndrome
primary ciliary dyskinesia
  • ciliary motility disorder
ciliary dyskinesia, primary, 1
  • pcd
senile ectropion
  • involutional ectropion
- elite association - COSMIC cancer census association via MalaCards


  • Ciliary dyskinesia, primary, 2 (CILD2) [MIM:606763]: A disorder characterized by abnormalities of motile cilia. Respiratory infections leading to chronic inflammation and bronchiectasis are recurrent, due to defects in the respiratory cilia; reduced fertility is often observed in male patients due to abnormalities of sperm tails. Half of the patients exhibit randomization of left-right body asymmetry and situs inversus, due to dysfunction of monocilia at the embryonic node. Primary ciliary dyskinesia associated with situs inversus is referred to as Kartagener syndrome. {ECO:0000269 PubMed:22387996}. Note=The disease is caused by mutations affecting the gene represented in this entry.

Additional Disease Information for DNAAF3

genes like me logo Genes that share disorders with DNAAF3: view

No data available for Genatlas for DNAAF3 Gene

Publications for DNAAF3 Gene

  1. Mutations in axonemal dynein assembly factor DNAAF3 cause primary ciliary dyskinesia. (PMID: 22387996) Mitchison HM … Mitchell DR (Nature genetics 2012) 2 3 4 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 58
  3. Architecture of the human interactome defines protein communities and disease networks. (PMID: 28514442) Huttlin EL … Harper JW (Nature 2017) 3 58
  4. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin EL … Gygi SP (Cell 2015) 3 58
  5. A deep proteomics perspective on CRM1-mediated nuclear export and nucleocytoplasmic partitioning. (PMID: 26673895) Kırlı K … Görlich D (eLife 2015) 3 58

Products for DNAAF3 Gene

Sources for DNAAF3 Gene

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