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Aliases for DLX6-AS1 Gene

Subcategory (RNA class) for DLX6-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for DLX6-AS1 Gene

  • DLX6 Antisense RNA 1 2 3 5
  • DLX6 Antisense RNA 1 (Non-Protein Coding) 2 3
  • DLX6 Antisense RNA (Non-Protein Coding) 3
  • Non-Protein Coding RNA 212 2
  • NCRNA00212 3
  • DLX6-AS 3
  • DLX6AS 3
  • Evf-2 3

External Ids for DLX6-AS1 Gene

Previous HGNC Symbols for DLX6-AS1 Gene

  • NCRNA00212

Previous GeneCards Identifiers for DLX6-AS1 Gene

  • GC07M096595

Summaries for DLX6-AS1 Gene

GeneCards Summary for DLX6-AS1 Gene

DLX6-AS1 (DLX6 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with DLX6-AS1 include Neuropathy and Split-Hand/Foot Malformation 2.

Additional gene information for DLX6-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DLX6-AS1 Gene

Genomics for DLX6-AS1 Gene

GeneHancer (GH) Regulatory Elements for DLX6-AS1 Gene

Promoters and enhancers for DLX6-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07J097014 Promoter 0.5 EPDnew 650.7 0.0 -15 0.1 DLX6-AS1 ENSG00000274709 SEM1 DLX5
GH07J097012 Enhancer 0.5 UCNEbase 650.7 +1.9 1894 0.3 EZH2 DLX6-AS1 ENSG00000274709 GC07M097006
GH07J097013 Enhancer 0.5 FANTOM5 650.7 +1.1 1135 0.2 SP1 POLR2A ZSCAN29 EZH2 DLX6-AS1 ENSG00000274709 DLX5 DLX6 GC07M097006
GH07J097004 Promoter/Enhancer 2.7 VISTA UCNEbase EPDnew Ensembl ENCODE 0.4 +8.2 8245 3.1 ATF1 ZFP64 ARID4B DMAP1 ZNF2 ZNF48 YY1 GLIS2 ZNF143 NFKBIZ DLX6 GC07M097006 GC07P097004 DLX6-AS1
GH07J097000 Enhancer 0.5 ENCODE 0.4 +12.3 12321 1.8 SP1 SUZ12 BACH1 EZH2 GC07P097004 DLX6-AS1 GC07P096967
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around DLX6-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for DLX6-AS1 Gene

Genomic Locations for DLX6-AS1 Gene
chr7:96,955,141-97,014,065
(GRCh38/hg38)
Size:
58,925 bases
Orientation:
Minus strand
chr7:96,584,453-96,643,377
(GRCh37/hg19)

Genomic View for DLX6-AS1 Gene

Genes around DLX6-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
DLX6-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DLX6-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DLX6-AS1 Gene

Proteins for DLX6-AS1 Gene

Post-translational modifications for DLX6-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for DLX6-AS1 Gene

Domains & Families for DLX6-AS1 Gene

Gene Families for DLX6-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with DLX6-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for DLX6-AS1 Gene

Function for DLX6-AS1 Gene

Phenotypes From GWAS Catalog for DLX6-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for DLX6-AS1 Gene

Localization for DLX6-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for DLX6-AS1 Gene

Pathways & Interactions for DLX6-AS1 Gene

SuperPathways for DLX6-AS1 Gene

No Data Available

Interacting Proteins for DLX6-AS1 Gene

Gene Ontology (GO) - Biological Process for DLX6-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for DLX6-AS1 Gene

Drugs & Compounds for DLX6-AS1 Gene

No Compound Related Data Available

Transcripts for DLX6-AS1 Gene

mRNA/cDNA for DLX6-AS1 Gene

Unigene Clusters for DLX6-AS1 Gene

DLX6 antisense RNA 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for DLX6-AS1 Gene

No ASD Table

Relevant External Links for DLX6-AS1 Gene

GeneLoc Exon Structure for
DLX6-AS1
ECgene alternative splicing isoforms for
DLX6-AS1

Expression for DLX6-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for DLX6-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for DLX6-AS1 Gene

This gene is overexpressed in Brain - Anterior cingulate cortex (BA24) (x7.1), Brain - Caudate (basal ganglia) (x6.4), Brain - Putamen (basal ganglia) (x5.9), Brain - Nucleus accumbens (basal ganglia) (x5.8), and Brain - Amygdala (x4.8).

SOURCE GeneReport for Unigene cluster for DLX6-AS1 Gene:

Hs.34969
genes like me logo Genes that share expression patterns with DLX6-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for DLX6-AS1 Gene

Orthologs for DLX6-AS1 Gene

Evolution for DLX6-AS1 Gene

ENSEMBL:
Gene Tree for DLX6-AS1 (if available)
TreeFam:
Gene Tree for DLX6-AS1 (if available)

No data available for Orthologs for DLX6-AS1 Gene

Paralogs for DLX6-AS1 Gene

No data available for Paralogs for DLX6-AS1 Gene

Variants for DLX6-AS1 Gene

Sequence variations from dbSNP and Humsavar for DLX6-AS1 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1000020107 -- 97,013,122(-) A/G intron_variant
rs1000039266 -- 97,002,186(-) G/T intron_variant
rs1000119036 -- 96,981,438(-) T/G intron_variant
rs1000323074 -- 96,993,327(-) G/A intron_variant
rs1000436552 -- 97,001,837(-) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for DLX6-AS1 Gene

Variant ID Type Subtype PubMed ID
esv1318286 CNV deletion 17803354
nsv1149699 CNV deletion 26484159
nsv824221 CNV gain 20364138
nsv981549 CNV duplication 23825009

Additional Variant Information for DLX6-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
DLX6-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for DLX6-AS1 Gene

Disorders for DLX6-AS1 Gene

MalaCards: The human disease database

(5) MalaCards diseases for DLX6-AS1 Gene - From: LncRNADisease and DISEASES

Disorder Aliases PubMed IDs
neuropathy
  • peripheral neuropathy
split-hand/foot malformation 2
  • shfm2
nervous system disease
  • abnormality of the nervous system
lung cancer susceptibility 3
  • lncr3
coffin-siris syndrome 1
  • css1
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for DLX6-AS1

genes like me logo Genes that share disorders with DLX6-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for DLX6-AS1 Gene

Publications for DLX6-AS1 Gene

  1. Long noncoding RNA DLX6-AS1 promotes renal cell carcinoma progression via miR-26a/PTEN axis. (PMID: 28881158) Zeng X … Liu Z (Cell cycle (Georgetown, Tex.) 2017) 2 3 58
  2. The Evf-2 noncoding RNA is transcribed from the Dlx-5/6 ultraconserved region and functions as a Dlx-2 transcriptional coactivator. (PMID: 16705037) Feng J … Kohtz JD (Genes & development 2006) 2 3 58
  3. Expression of long non-coding RNA DLX6-AS1 in lung adenocarcinoma. (PMID: 26052251) Li J … Zhang G (Cancer cell international 2015) 3 58
  4. A genome-wide association study identifies susceptibility loci for ossification of the posterior longitudinal ligament of the spine. (PMID: 25064007) Nakajima M … Ikegawa S (Nature genetics 2014) 3 58
  5. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T … Vidal M (Cell 2014) 3 58

Products for DLX6-AS1 Gene

Sources for DLX6-AS1 Gene

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