Aliases for DLGAP4-AS1 Gene

Subcategory (RNA class) for DLGAP4-AS1 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for DLGAP4-AS1 Gene

  • DLGAP4 Antisense RNA 1 2 3 5
  • DLGAP4-AS1 2 170
  • HSALNG0129835 169
  • NONHSAG031703 94
  • CCAT7 3

External Ids for DLGAP4-AS1 Gene

Summaries for DLGAP4-AS1 Gene

GeneCards Summary for DLGAP4-AS1 Gene

DLGAP4-AS1 (DLGAP4 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with DLGAP4-AS1 include Colorectal Cancer.

Additional gene information for DLGAP4-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for DLGAP4-AS1 Gene

Genomics for DLGAP4-AS1 Gene

GeneHancer (GH) Regulatory Elements for DLGAP4-AS1 Gene

Promoters and enhancers for DLGAP4-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around DLGAP4-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for DLGAP4-AS1 Gene

Genomic Locations for DLGAP4-AS1 Gene
chr20:36,506,754-36,573,391
(GRCh38/hg38)
Size:
66,638 bases
Orientation:
Minus strand
chr20:35,136,563-35,201,794
(GRCh37/hg19)
Size:
65,232 bases
Orientation:
Minus strand

Genomic View for DLGAP4-AS1 Gene

Genes around DLGAP4-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
DLGAP4-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DLGAP4-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DLGAP4-AS1 Gene

Proteins for DLGAP4-AS1 Gene

Post-translational modifications for DLGAP4-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for DLGAP4-AS1 Gene

Domains & Families for DLGAP4-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for DLGAP4-AS1 Gene

Function for DLGAP4-AS1 Gene

Phenotypes From GWAS Catalog for DLGAP4-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for DLGAP4-AS1 Gene

Localization for DLGAP4-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for DLGAP4-AS1 Gene

Pathways & Interactions for DLGAP4-AS1 Gene

PathCards logo

SuperPathways for DLGAP4-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for DLGAP4-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for DLGAP4-AS1 Gene

Drugs & Compounds for DLGAP4-AS1 Gene

No Compound Related Data Available

Transcripts for DLGAP4-AS1 Gene

mRNA/cDNA for DLGAP4-AS1 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(6) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(17) RNACentral transcripts :
(15) LNCipedia transcripts :
(7) LncBook transcripts :
(7) NONCODE transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for DLGAP4-AS1 Gene

No ASD Table

Relevant External Links for DLGAP4-AS1 Gene

GeneLoc Exon Structure for
DLGAP4-AS1
ECgene alternative splicing isoforms for
DLGAP4-AS1

Expression for DLGAP4-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for DLGAP4-AS1 Gene

genes like me logo Genes that share expression patterns with DLGAP4-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for DLGAP4-AS1 Gene

Orthologs for DLGAP4-AS1 Gene

Evolution for DLGAP4-AS1 Gene

ENSEMBL:
Gene Tree for DLGAP4-AS1 (if available)
TreeFam:
Gene Tree for DLGAP4-AS1 (if available)

No data available for Orthologs for DLGAP4-AS1 Gene

Paralogs for DLGAP4-AS1 Gene

No data available for Paralogs for DLGAP4-AS1 Gene

Variants for DLGAP4-AS1 Gene

Sequence variations from dbSNP and Humsavar for DLGAP4-AS1 Gene

SNP ID Clin Chr 20 pos Variation AA Info Type
rs1000007088 -- 36,527,805(-) C/A/G intron_variant
rs1000033870 -- 36,517,010(-) C/T intron_variant
rs1000100449 -- 36,561,017(-) A/G intron_variant
rs1000113312 -- 36,562,111(-) C/G intron_variant
rs1000115364 -- 36,523,134(-) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for DLGAP4-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2658049 CNV deletion 23128226
esv2722376 CNV deletion 23290073
esv3645736 CNV loss 21293372
esv3645737 CNV loss 21293372
esv3645738 CNV loss 21293372
nsv1057192 CNV loss 25217958
nsv833967 CNV loss 17160897

Additional Variant Information for DLGAP4-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
DLGAP4-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for DLGAP4-AS1 Gene

Disorders for DLGAP4-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for DLGAP4-AS1 Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
colorectal cancer
  • crc
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for DLGAP4-AS1

genes like me logo Genes that share disorders with DLGAP4-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for DLGAP4-AS1 Gene

Publications for DLGAP4-AS1 Gene

  1. Role of MYC-regulated long noncoding RNAs in cell cycle regulation and tumorigenesis. (PMID: 25663692) Kim T … Croce CM (Journal of the National Cancer Institute 2015) 2 3 56
  2. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. (PMID: 29117863) Choudhury NR … Michlewski G (BMC biology 2017) 3 56

Products for DLGAP4-AS1 Gene

Sources for DLGAP4-AS1 Gene