Aliases for DLGAP2-AS1 Gene

Subcategory (RNA class) for DLGAP2-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for DLGAP2-AS1 Gene

  • DLGAP2 Antisense RNA 1 2 3 5
  • DLGAP2-AS1 2 5 165
  • NONHSAG049362.2 91
  • HSALNG0062942 164

External Ids for DLGAP2-AS1 Gene

Additional External Ids for DLGAP2-AS1 Gene

Summaries for DLGAP2-AS1 Gene

GeneCards Summary for DLGAP2-AS1 Gene

DLGAP2-AS1 (DLGAP2 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for DLGAP2-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for DLGAP2-AS1 Gene

Genomics for DLGAP2-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for DLGAP2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J001622 Enhancer 0.2 Ensembl 600.7 +0.0 17 0.4 DLGAP2-AS1 piR-33863-106 CLN8 DLGAP2 ERICH1
GH08J001657 Enhancer 0.7 FANTOM5 ENCODE 10.6 -35.8 -35782 0.6 RFX1 YY1 POLR2A SIN3A TAF1 TBP SP1 POU5F1 DLGAP2-AS1 piR-37972-631 CLN8 DLGAP2 ERICH1
GH08J001652 Enhancer 0.4 Ensembl 10.7 -29.9 -29882 0.6 TEAD4 POLR2A SP1 EZH2 DLGAP2-AS1 piR-37972-631 CLN8 DLGAP2 ERICH1
GH08J001658 Enhancer 0.3 Ensembl 9.4 -36.4 -36383 0.4 CBX8 DLGAP2-AS1 piR-37972-631 CLN8 DLGAP2 ERICH1
GH08J001651 Enhancer 0.3 ENCODE 5.9 -29.5 -29510 0.1 POLR2A EZH2 DLGAP2-AS1 piR-37972-631 CLN8 DLGAP2 ERICH1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around DLGAP2-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for DLGAP2-AS1 Gene

Genomic Locations for DLGAP2-AS1 Gene
chr8:1,565,509-1,622,418
(GRCh38/hg38)
Size:
56,910 bases
Orientation:
Minus strand
chr8:1,513,675-1,570,583
(GRCh37/hg19)
Size:
56,909 bases
Orientation:
Minus strand

Genomic View for DLGAP2-AS1 Gene

Genes around DLGAP2-AS1 on UCSC Golden Path with GeneCards custom track
DLGAP2-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
DLGAP2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DLGAP2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DLGAP2-AS1 Gene

Proteins for DLGAP2-AS1 Gene

Post-translational modifications for DLGAP2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for DLGAP2-AS1 Gene

Domains & Families for DLGAP2-AS1 Gene

Gene Families for DLGAP2-AS1 Gene

genes like me logo Genes that share domains with DLGAP2-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for DLGAP2-AS1 Gene

Function for DLGAP2-AS1 Gene

Phenotypes From GWAS Catalog for DLGAP2-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for DLGAP2-AS1 Gene

Localization for DLGAP2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for DLGAP2-AS1 Gene

Pathways & Interactions for DLGAP2-AS1 Gene

PathCards logo

SuperPathways for DLGAP2-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for DLGAP2-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for DLGAP2-AS1 Gene

Drugs & Compounds for DLGAP2-AS1 Gene

No Compound Related Data Available

Transcripts for DLGAP2-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for DLGAP2-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000044A2B2_9606 lncRNA 1810 4

Ensembl: ENST00000518009 (view in UCSC) , ENST00000632110 (view in UCSC) ,

LncBook: HSALNT0132007,

LNCipedia: DLGAP2-AS1:1,

NONCODE: NONHSAT124672.2,

URS00002FC89C_9606 lncRNA 587 4

Ensembl: ENST00000518063 (view in UCSC) ,

LncBook: HSALNT0132003,

LNCipedia: DLGAP2-AS1:3,

NONCODE: NONHSAT124670.2,

URS000075C28A_9606 lncRNA 587 3

HGNC: 50467,

RefSeq: NR_103863,

LNCipedia: DLGAP2-AS1:4,

URS00008C38DF_9606 lncRNA 586 3

LncBook: HSALNT0132004, HSALNT0132005,

LNCipedia: DLGAP2-AS1:2,

NONCODE: NONHSAT124671.2,

URS00009BF103_9606 lncRNA 2090 1

NONCODE: NONHSAT216707.1,

DLGAP2-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for DLGAP2-AS1 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for DLGAP2-AS1 Gene

No ASD Table

Relevant External Links for DLGAP2-AS1 Gene

GeneLoc Exon Structure for
DLGAP2-AS1

Expression for DLGAP2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for DLGAP2-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for DLGAP2-AS1

genes like me logo Genes that share expression patterns with DLGAP2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for DLGAP2-AS1 Gene

Orthologs for DLGAP2-AS1 Gene

Evolution for DLGAP2-AS1 Gene

ENSEMBL:
Gene Tree for DLGAP2-AS1 (if available)
TreeFam:
Gene Tree for DLGAP2-AS1 (if available)

No data available for Orthologs for DLGAP2-AS1 Gene

Paralogs for DLGAP2-AS1 Gene

No data available for Paralogs for DLGAP2-AS1 Gene

Variants for DLGAP2-AS1 Gene

Additional dbSNP identifiers (rs#s) for DLGAP2-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for DLGAP2-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv6803n100 CNV gain 25217958
dgv6804n100 CNV gain 25217958
dgv6805n100 CNV gain+loss 25217958
dgv6806n100 CNV gain 25217958
esv1567761 CNV deletion 17803354
esv21666 CNV loss 19812545
esv2410209 CNV deletion 18987734
esv2447133 CNV deletion 19546169
esv26265 CNV gain 19812545
esv2660259 CNV deletion 23128226
esv2662501 CNV deletion 23128226
esv2736273 CNV deletion 23290073
esv2736275 CNV deletion 23290073
esv2736276 CNV deletion 23290073
esv2736277 CNV deletion 23290073
esv2736278 CNV deletion 23290073
esv2736279 CNV deletion 23290073
esv2736280 CNV deletion 23290073
esv2736281 CNV deletion 23290073
esv2736282 CNV deletion 23290073
esv2736283 CNV deletion 23290073
esv2736284 CNV deletion 23290073
esv3572385 CNV loss 25503493
esv3576504 CNV gain 25503493
esv3615838 CNV gain 21293372
esv988773 CNV deletion 20482838
nsv1024325 CNV gain 25217958
nsv1026034 CNV gain+loss 25217958
nsv1029332 CNV loss 25217958
nsv1034963 CNV loss 25217958
nsv1076037 CNV deletion 25765185
nsv1132123 CNV deletion 24896259
nsv1135995 CNV deletion 24896259
nsv1146904 CNV deletion 26484159
nsv469881 CNV loss 16826518
nsv482921 CNV gain 15286789
nsv6045 CNV insertion 18451855
nsv609509 CNV gain 21841781
nsv950273 CNV deletion 24416366

Additional Variant Information for DLGAP2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
DLGAP2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for DLGAP2-AS1 Gene

Disorders for DLGAP2-AS1 Gene

Additional Disease Information for DLGAP2-AS1

No disorders were found for DLGAP2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for DLGAP2-AS1 Gene

Publications for DLGAP2-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

Products for DLGAP2-AS1 Gene

Sources for DLGAP2-AS1 Gene