Aliases for DLGAP1-AS5 Gene

Subcategory (RNA class) for DLGAP1-AS5 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for DLGAP1-AS5 Gene

  • DLGAP1 Antisense RNA 5 2 3 5
  • DLGAP1-AS5 2 5 165
  • DLGAP1 Antisense RNA 5 (Non-Protein Coding) 2 3
  • NONHSAG023246.2 91
  • HSALNG0119731 164
  • HSALNG0119730 164

External Ids for DLGAP1-AS5 Gene

Summaries for DLGAP1-AS5 Gene

GeneCards Summary for DLGAP1-AS5 Gene

DLGAP1-AS5 (DLGAP1 Antisense RNA 5) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for DLGAP1-AS5 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for DLGAP1-AS5 Gene

Genomics for DLGAP1-AS5 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for DLGAP1-AS5 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J004264 Promoter/Enhancer 0.9 EPDnew Ensembl 600.7 +0.4 365 1.1 IKZF2 RELB CEBPB GATAD2B NR2F2 NBN HDGF IKZF1 NR2F1 TBP DLGAP1-AS5 lnc-TGIF1-9 piR-31534-296 lnc-AKAIN1-9 DLGAP1 TGIF1
GH18J004256 Enhancer 0.6 Ensembl 0.4 -7.7 -7672 1.1 TRIM22 PKNOX1 DPF2 RELB ARNT NBN HDGF IKZF1 TBX21 ATF7 lnc-TGIF1-9 DLGAP1-AS5 DLGAP1 lnc-AKAIN1-9 TGIF1
GH18J004284 Enhancer 0.5 Ensembl 0.4 +19.9 19894 1 NBN BHLHE40 ZNF687 EZH2 MLLT1 piR-31534-296 DLGAP1-AS5 lnc-TGIF1-9 DLGAP1 lnc-AKAIN1-9 TGIF1
GH18J004254 Enhancer 0.3 Ensembl 0.4 -9.4 -9406 0.8 MLLT1 lnc-TGIF1-9 DLGAP1-AS5 DLGAP1 lnc-AKAIN1-9 TGIF1
GH18J004258 Enhancer 0.2 Ensembl 0.4 -5.3 -5306 0.6 lnc-TGIF1-9 DLGAP1-AS5 DLGAP1 lnc-AKAIN1-9 TGIF1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around DLGAP1-AS5 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for DLGAP1-AS5 Gene

Genomic Locations for DLGAP1-AS5 Gene
chr18:4,264,407-4,296,000
(GRCh38/hg38)
Size:
31,594 bases
Orientation:
Plus strand
chr18:4,264,602-4,296,000
(GRCh37/hg19)
Size:
31,399 bases
Orientation:
Plus strand

Genomic View for DLGAP1-AS5 Gene

Genes around DLGAP1-AS5 on UCSC Golden Path with GeneCards custom track
DLGAP1-AS5 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
DLGAP1-AS5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DLGAP1-AS5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DLGAP1-AS5 Gene

Proteins for DLGAP1-AS5 Gene

Post-translational modifications for DLGAP1-AS5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for DLGAP1-AS5 Gene

Domains & Families for DLGAP1-AS5 Gene

Gene Families for DLGAP1-AS5 Gene

genes like me logo Genes that share domains with DLGAP1-AS5: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for DLGAP1-AS5 Gene

Function for DLGAP1-AS5 Gene

Phenotypes From GWAS Catalog for DLGAP1-AS5 Gene

Phenotypes for DLGAP1-AS5 Gene

genes like me logo Genes that share phenotypes with DLGAP1-AS5: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for DLGAP1-AS5 Gene

Localization for DLGAP1-AS5 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for DLGAP1-AS5 Gene

Pathways & Interactions for DLGAP1-AS5 Gene

PathCards logo

SuperPathways for DLGAP1-AS5 Gene

No Data Available

Gene Ontology (GO) - Biological Process for DLGAP1-AS5 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for DLGAP1-AS5 Gene

Drugs & Compounds for DLGAP1-AS5 Gene

No Compound Related Data Available

Transcripts for DLGAP1-AS5 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for DLGAP1-AS5 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075E133_9606 lncRNA 3220 4

HGNC: 27586,

RefSeq: NR_036489,

LNCipedia: DLGAP1-AS5:3,

NONCODE: NONHSAT057030.2,

URS00003C6BC4_9606 lncRNA 579 4

Ensembl: ENST00000565979 (view in UCSC) ,

LncBook: HSALNT0247271,

LNCipedia: DLGAP1-AS5:6,

NONCODE: NONHSAT057033.2,

URS00002DABDE_9606 lncRNA 543 4

Ensembl: ENST00000565759 (view in UCSC) ,

LncBook: HSALNT0247268,

LNCipedia: DLGAP1-AS5:2,

NONCODE: NONHSAT057031.2,

URS0000516B75_9606 lncRNA 2594 3

Ensembl: ENST00000565811 (view in UCSC) ,

LncBook: HSALNT0247273,

LNCipedia: DLGAP1-AS5:4,

URS00005C50E8_9606 lncRNA 522 3

Ensembl: ENST00000568986 (view in UCSC) ,

LncBook: HSALNT0247272,

LNCipedia: DLGAP1-AS5:5,

DLGAP1-AS5 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for DLGAP1-AS5 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for DLGAP1-AS5 Gene

No ASD Table

Relevant External Links for DLGAP1-AS5 Gene

GeneLoc Exon Structure for
DLGAP1-AS5

Expression for DLGAP1-AS5 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for DLGAP1-AS5 Gene

mRNA differential expression in normal tissues according to GTEx for DLGAP1-AS5 Gene

This gene is overexpressed in Minor Salivary Gland (x12.2).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for DLGAP1-AS5

SOURCE GeneReport for Unigene cluster for DLGAP1-AS5 Gene:

Hs.647594
genes like me logo Genes that share expression patterns with DLGAP1-AS5: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for DLGAP1-AS5 Gene

Orthologs for DLGAP1-AS5 Gene

Evolution for DLGAP1-AS5 Gene

ENSEMBL:
Gene Tree for DLGAP1-AS5 (if available)
TreeFam:
Gene Tree for DLGAP1-AS5 (if available)

No data available for Orthologs for DLGAP1-AS5 Gene

Paralogs for DLGAP1-AS5 Gene

No data available for Paralogs for DLGAP1-AS5 Gene

Variants for DLGAP1-AS5 Gene

Additional dbSNP identifiers (rs#s) for DLGAP1-AS5 Gene

Structural Variations from Database of Genomic Variants (DGV) for DLGAP1-AS5 Gene

Variant ID Type Subtype PubMed ID
dgv184n21 CNV gain 19592680
dgv3315n100 CNV gain 25217958
esv2656305 CNV loss 23635498
esv3641621 CNV loss 21293372
esv3893065 CNV gain 25118596
nsv131453 CNV deletion 16902084
nsv510446 OTHER sequence alteration 20534489
nsv523068 CNV loss 19592680

Additional Variant Information for DLGAP1-AS5 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
DLGAP1-AS5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for DLGAP1-AS5 Gene

Disorders for DLGAP1-AS5 Gene

No disorders were found for DLGAP1-AS5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for DLGAP1-AS5 Gene

Publications for DLGAP1-AS5 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

Products for DLGAP1-AS5 Gene

Sources for DLGAP1-AS5 Gene