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DLGAP1-AS5 Gene(RNA Gene)

DLGAP1 Antisense RNA 5

GCID:
GC18P004264
GIFtS:
15
Genes Participants
UDN Logo

Aliases for DLGAP1-AS5 Gene

Subcategory (RNA class) for DLGAP1-AS5 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for DLGAP1-AS5 Gene

  • DLGAP1 Antisense RNA 5 2 3 5
  • DLGAP1 Antisense RNA 5 (Non-Protein Coding) 2

External Ids for DLGAP1-AS5 Gene

Summaries for DLGAP1-AS5 Gene

GeneCards Summary for DLGAP1-AS5 Gene

DLGAP1-AS5 (DLGAP1 Antisense RNA 5) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for DLGAP1-AS5 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DLGAP1-AS5 Gene

Genomics for DLGAP1-AS5 Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for DLGAP1-AS5 Gene

Promoters and enhancers for DLGAP1-AS5 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH18I004245 Promoter 0.6 EPDnew 0.4 -18.9 -18945 0.1 MAFK DLGAP1 DLGAP1-AS5 GC18M004161
GH18I004182 Enhancer 0.6 ENCODE 0.2 -82.2 -82226 0.2 SOX5 SOX13 CTCF FOXA2 NR2F1 RAD21 ZNF217 LCORL HNF4A NR2F6 DLGAP1 GC18M004161 DLGAP1-AS5
GH18I004328 Enhancer 0.2 FANTOM5 0.2 +64.3 64345 0.4 GC18P004335 DLGAP1-AS5 DLGAP1
GH18I004207 Enhancer 0.2 ENCODE 0.2 -57.0 -57046 0.2 GC18M004161 DLGAP1-AS5 DLGAP1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around DLGAP1-AS5 on UCSC Golden Path with GeneCards custom track

Genomic Locations for DLGAP1-AS5 Gene

Genomic Locations for DLGAP1-AS5 Gene
chr18:4,264,602-4,296,000
(GRCh38/hg38)
Size:
31,399 bases
Orientation:
Plus strand
chr18:4,264,602-4,296,000
(GRCh37/hg19)

Genomic View for DLGAP1-AS5 Gene

Genes around DLGAP1-AS5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
DLGAP1-AS5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DLGAP1-AS5 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for DLGAP1-AS5 Gene

Proteins for DLGAP1-AS5 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for DLGAP1-AS5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for DLGAP1-AS5 Gene

Domains & Families for DLGAP1-AS5 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for DLGAP1-AS5 Gene

Function for DLGAP1-AS5 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes for DLGAP1-AS5 Gene

GenomeRNAi human phenotypes for DLGAP1-AS5:
genes like me logo Genes that share phenotypes with DLGAP1-AS5: view

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for DLGAP1-AS5 Gene

Localization for DLGAP1-AS5 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for DLGAP1-AS5 Gene

Pathways & Interactions for DLGAP1-AS5 Gene

SuperPathways for DLGAP1-AS5 Gene

PathCards logo More details on SuperPathways for DLGAP1-AS5
No Data Available

Interacting Proteins for DLGAP1-AS5 Gene

Gene Ontology (GO) - Biological Process for DLGAP1-AS5 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for DLGAP1-AS5 Gene

Drugs & Compounds for DLGAP1-AS5 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for DLGAP1-AS5 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for DLGAP1-AS5 Gene

(2) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for DLGAP1-AS5 Gene

DLGAP1 antisense RNA 5:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for DLGAP1-AS5 Gene

No ASD Table

Relevant External Links for DLGAP1-AS5 Gene

GeneLoc Exon Structure for
DLGAP1-AS5
ECgene alternative splicing isoforms for
DLGAP1-AS5

Expression for DLGAP1-AS5 Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for DLGAP1-AS5 Gene

mRNA expression in normal human tissues for DLGAP1-AS5 Gene
mRNA expression by GTEx for DLGAP1-AS5 Gene

mRNA differential expression in normal tissues according to GTEx for DLGAP1-AS5 Gene

This gene is overexpressed in Minor Salivary Gland (x12.2).

SOURCE GeneReport for Unigene cluster for DLGAP1-AS5 Gene:

Hs.647594
genes like me logo Genes that share expression patterns with DLGAP1-AS5: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for DLGAP1-AS5 Gene

Orthologs for DLGAP1-AS5 Gene

Evolution for DLGAP1-AS5 Gene

ENSEMBL:
Gene Tree for DLGAP1-AS5 (if available)
TreeFam:
Gene Tree for DLGAP1-AS5 (if available)

No data available for Orthologs for DLGAP1-AS5 Gene

Paralogs for DLGAP1-AS5 Gene

No data available for Paralogs for DLGAP1-AS5 Gene

Variants for DLGAP1-AS5 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Sequence variations from dbSNP and Humsavar for DLGAP1-AS5 Gene

SNP ID Clin Chr 18 pos Variation AA Info Type
rs1000178247 -- 4,289,526(+) CCAAAGTAGCCAAA/CCAAA intron_variant
rs1000188087 -- 4,270,157(+) T/G intron_variant
rs1000266233 -- 4,285,862(+) A/G intron_variant
rs1000311645 -- 4,263,062(+) T/C upstream_transcript_variant
rs1000334471 -- 4,265,486(+) CTTTC/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for DLGAP1-AS5 Gene

Variant ID Type Subtype PubMed ID
dgv184n21 CNV gain 19592680
dgv3315n100 CNV gain 25217958
esv2656305 CNV loss 23635498
esv3641621 CNV loss 21293372
esv3893065 CNV gain 25118596
nsv131453 CNV deletion 16902084
nsv510446 OTHER sequence alteration 20534489
nsv523068 CNV loss 19592680

Additional Variant Information for DLGAP1-AS5 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
DLGAP1-AS5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for DLGAP1-AS5 Gene

Disorders for DLGAP1-AS5 Gene

Additional Disease Information for DLGAP1-AS5

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for DLGAP1-AS5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for DLGAP1-AS5 Gene

Publications for DLGAP1-AS5 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for DLGAP1-AS5 Gene

Sources for DLGAP1-AS5 Gene

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