Aliases for DLGAP1-AS4 Gene

Subcategory (RNA class) for DLGAP1-AS4 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for DLGAP1-AS4 Gene

  • DLGAP1 Antisense RNA 4 2 3 5
  • DLGAP1-AS4 2 5 165
  • DLGAP1 Antisense RNA 4 (Non-Protein Coding) 2 3
  • NONHSAG023243.2 91
  • HSALNG0119724 164

External Ids for DLGAP1-AS4 Gene

Previous GeneCards Identifiers for DLGAP1-AS4 Gene

  • GC00U934039

Summaries for DLGAP1-AS4 Gene

GeneCards Summary for DLGAP1-AS4 Gene

DLGAP1-AS4 (DLGAP1 Antisense RNA 4) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for DLGAP1-AS4 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for DLGAP1-AS4 Gene

Genomics for DLGAP1-AS4 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for DLGAP1-AS4 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J003963 Enhancer 0.2 FANTOM5 600.7 +1.1 1052 0.4 DLGAP1-AS4 DLGAP1 GAPDHP66 TGIF1
GH18J003959 Enhancer 0.2 Ensembl 600.7 -1.9 -1852 1.4 DLGAP1-AS4 piR-61532-123 DLGAP1 TGIF1
GH18J003965 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 +5.2 5157 3 PRDM10 ZNF629 ZNF692 PRDM1 ZSCAN4 PATZ1 ZNF501 ZNF600 ZNF148 SCRT2 DLGAP1-AS4 GAPDHP66 DLGAP1 TGIF1
GH18J003982 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 +22.2 22248 4.8 PRDM10 ZNF629 PKNOX1 TCF12 ZBTB44 SP1 ZNF639 ZNF766 HMBOX1 KLF7 GAPDHP66 piR-48209-300 DLGAP1-AS4 lnc-MYOM1-12 DLGAP1 lnc-AKAIN1-9 TGIF1
GH18J003996 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.3 +33.2 33248 0.8 CTCF RAD21 TRIM22 RUNX3 SMC3 ZNF384 EBF1 ZNF654 TBX21 ZNF664 piR-48209-300 DLGAP1-AS4 piR-46323 lnc-MYOM1-12 DLGAP1 lnc-AKAIN1-9 TGIF1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around DLGAP1-AS4 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for DLGAP1-AS4 Gene

Genomic Locations for DLGAP1-AS4 Gene
chr18:3,962,353-4,024,150
(GRCh38/hg38)
Size:
61,798 bases
Orientation:
Plus strand
chr18:3,962,353-4,013,943
(GRCh37/hg19)
Size:
51,591 bases
Orientation:
Plus strand

Genomic View for DLGAP1-AS4 Gene

Genes around DLGAP1-AS4 on UCSC Golden Path with GeneCards custom track
DLGAP1-AS4 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
DLGAP1-AS4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DLGAP1-AS4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DLGAP1-AS4 Gene

Proteins for DLGAP1-AS4 Gene

Post-translational modifications for DLGAP1-AS4 Gene

No Post-translational modifications

No data available for DME Specific Peptides for DLGAP1-AS4 Gene

Domains & Families for DLGAP1-AS4 Gene

Gene Families for DLGAP1-AS4 Gene

genes like me logo Genes that share domains with DLGAP1-AS4: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for DLGAP1-AS4 Gene

Function for DLGAP1-AS4 Gene

Phenotypes From GWAS Catalog for DLGAP1-AS4 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for DLGAP1-AS4 Gene

Localization for DLGAP1-AS4 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for DLGAP1-AS4 Gene

Pathways & Interactions for DLGAP1-AS4 Gene

PathCards logo

SuperPathways for DLGAP1-AS4 Gene

No Data Available

Gene Ontology (GO) - Biological Process for DLGAP1-AS4 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for DLGAP1-AS4 Gene

Drugs & Compounds for DLGAP1-AS4 Gene

No Compound Related Data Available

Transcripts for DLGAP1-AS4 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for DLGAP1-AS4 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00005527E9_9606 lncRNA 757 5

HGNC: 44333,

RefSeq: NR_102696,

LncBook: HSALNT0247242,

LNCipedia: DLGAP1-AS4:1,

NONCODE: NONHSAT057021.2,

URS0000EF4BE4_9606 lncRNA 1817 1

Ensembl: ENST00000662752 (view in UCSC) ,

URS0000EF1AD6_9606 lncRNA 1526 1

Ensembl: ENST00000652891 (view in UCSC) ,

URS0000EEC5AC_9606 lncRNA 925 1

Ensembl: ENST00000661068 (view in UCSC) ,

URS0000EF1520_9606 lncRNA 837 1

Ensembl: ENST00000662697 (view in UCSC) ,

DLGAP1-AS4 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for DLGAP1-AS4 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for DLGAP1-AS4 Gene

No ASD Table

Relevant External Links for DLGAP1-AS4 Gene

GeneLoc Exon Structure for
DLGAP1-AS4

Expression for DLGAP1-AS4 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for DLGAP1-AS4 Gene

mRNA differential expression in normal tissues according to GTEx for DLGAP1-AS4 Gene

This gene is overexpressed in Brain - Cortex (x16.1), Brain - Frontal Cortex (BA9) (x15.1), and Brain - Anterior cingulate cortex (BA24) (x11.9).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for DLGAP1-AS4

genes like me logo Genes that share expression patterns with DLGAP1-AS4: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for DLGAP1-AS4 Gene

Orthologs for DLGAP1-AS4 Gene

Evolution for DLGAP1-AS4 Gene

ENSEMBL:
Gene Tree for DLGAP1-AS4 (if available)
TreeFam:
Gene Tree for DLGAP1-AS4 (if available)

No data available for Orthologs for DLGAP1-AS4 Gene

Paralogs for DLGAP1-AS4 Gene

No data available for Paralogs for DLGAP1-AS4 Gene

Variants for DLGAP1-AS4 Gene

Additional dbSNP identifiers (rs#s) for DLGAP1-AS4 Gene

Structural Variations from Database of Genomic Variants (DGV) for DLGAP1-AS4 Gene

Variant ID Type Subtype PubMed ID
dgv134e55 CNV gain 17911159
dgv184n21 CNV gain 19592680
esv1587054 CNV deletion 17803354
esv1608190 CNV insertion 17803354
esv2282661 CNV deletion 18987734
esv2432132 CNV deletion 19546169
esv2577067 CNV deletion 19546169
esv2658035 CNV deletion 23128226
esv2662794 CNV deletion 23128226
esv2716699 CNV deletion 23290073
esv2758710 CNV gain 17122850
esv3144901 CNV deletion 24192839
esv3554973 CNV deletion 23714750
esv3641611 CNV gain 21293372
esv3641612 CNV loss 21293372
esv3893065 CNV gain 25118596
esv4964 CNV loss 18987735
esv7766 CNV loss 19470904
nsv1066089 CNV loss 25217958
nsv1134691 CNV deletion 24896259
nsv1146733 CNV deletion 26484159
nsv131065 CNV deletion 16902084
nsv954941 CNV deletion 24416366
nsv9601 CNV gain 18304495
nsv960246 CNV duplication 23825009
nsv9603 CNV loss 18304495

Additional Variant Information for DLGAP1-AS4 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
DLGAP1-AS4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for DLGAP1-AS4 Gene

Disorders for DLGAP1-AS4 Gene

No disorders were found for DLGAP1-AS4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for DLGAP1-AS4 Gene

Publications for DLGAP1-AS4 Gene

No publications were found for DLGAP1-AS4 Gene.

Products for DLGAP1-AS4 Gene

Sources for DLGAP1-AS4 Gene