DLGAP1-AS3 Gene (RNA Gene)

DLGAP1 Antisense RNA 3

GC18P003880
GIFtS:
13
See more...

Aliases for DLGAP1-AS3 Gene

Subcategory (RNA class) for DLGAP1-AS3 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for DLGAP1-AS3 Gene

  • DLGAP1 Antisense RNA 3 2 3 5
  • DLGAP1-AS3 2 5 165
  • DLGAP1 Antisense RNA 3 (Non-Protein Coding) 2 3
  • NONHSAG023242.2 91
  • HSALNG0119722 164

External Ids for DLGAP1-AS3 Gene

Previous GeneCards Identifiers for DLGAP1-AS3 Gene

  • GC18U900703

Summaries for DLGAP1-AS3 Gene

GeneCards Summary for DLGAP1-AS3 Gene

DLGAP1-AS3 (DLGAP1 Antisense RNA 3) is an RNA Gene, and is affiliated with the lncRNA class.

Rfam classification for DLGAP1-AS3 Gene

Additional gene information for DLGAP1-AS3 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for DLGAP1-AS3 Gene

Genomics for DLGAP1-AS3 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for DLGAP1-AS3 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH18J003869 Enhancer 0.6 ENCODE 600.7 +1.8 1846 0.1 CTCF REST RAD21 ZSCAN5C MYC SMC3 ZNF654 ZBTB40 HNF4A ESRRA DLGAP1-AS3 piR-50889 TGIF1 DLGAP1
GH18J003867 Enhancer 0.5 Ensembl 606 -0.1 -109 1.9 CEBPG CEBPB ZFHX2 MAFK IRF9 HLF DLGAP1-AS3 DLGAP1 DLGAP1-AS1 lnc-MYOM1-8 TGIF1
GH18J003872 Promoter/Enhancer 0.9 Ensembl ENCODE 0.4 +5.1 5121 2.6 PRDM10 PRDM1 IKZF2 RELB ZBTB40 IKZF1 FEZF1 PRDM6 ATF7 MTA2 DLGAP1 DLGAP1-AS1 DLGAP1-AS3 piR-50889 TGIF1
GH18J003880 Promoter 0.5 EPDnew 0.4 +11.9 11924 0.1 GABPA GABPB1 piR-50889 DLGAP1 MIR6718 DLGAP1-AS3 TGIF1
GH18J003886 Enhancer 0.6 Ensembl ENCODE 0.4 +18.9 18940 1.2 TOE1 USF2 RAD51 MIR6718 DLGAP1 RNU6-831P RF00026-461 DLGAP1-AS3 TGIF1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around DLGAP1-AS3 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for DLGAP1-AS3 Gene

Genomic Locations for DLGAP1-AS3 Gene
chr18:3,868,180-3,897,069
(GRCh38/hg38)
Size:
28,890 bases
Orientation:
Plus strand
chr18:3,878,180-3,897,069
(GRCh37/hg19)
Size:
18,890 bases
Orientation:
Plus strand

Genomic View for DLGAP1-AS3 Gene

Genes around DLGAP1-AS3 on UCSC Golden Path with GeneCards custom track
DLGAP1-AS3 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
DLGAP1-AS3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DLGAP1-AS3 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for DLGAP1-AS3 Gene

Proteins for DLGAP1-AS3 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for DLGAP1-AS3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for DLGAP1-AS3 Gene

Domains & Families for DLGAP1-AS3 Gene

Gene Families for DLGAP1-AS3 Gene

HGNC:
genes like me logo Genes that share domains with DLGAP1-AS3: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for DLGAP1-AS3 Gene

Function for DLGAP1-AS3 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for DLGAP1-AS3 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for DLGAP1-AS3 Gene

Localization for DLGAP1-AS3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for DLGAP1-AS3 Gene

Pathways & Interactions for DLGAP1-AS3 Gene

PathCards logo

SuperPathways for DLGAP1-AS3 Gene

No Data Available

Gene Ontology (GO) - Biological Process for DLGAP1-AS3 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for DLGAP1-AS3 Gene

Drugs & Compounds for DLGAP1-AS3 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for DLGAP1-AS3 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for DLGAP1-AS3 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00004303C7_9606 lncRNA 1258 6

HGNC: 27317,

RefSeq: NR_038895,

Ensembl: ENST00000577649 (view in UCSC) ,

LncBook: HSALNT0247235,

LNCipedia: DLGAP1-AS3:1,

NONCODE: NONHSAT057017.2,

URS00001F23C2_9606 lncRNA 753 4

Ensembl: ENST00000583571 (view in UCSC) ,

LncBook: HSALNT0247238,

LNCipedia: DLGAP1-AS3:2,

NONCODE: NONHSAT057019.2,

URS0000EF34E4_9606 lncRNA 2599 1

Ensembl: ENST00000668905 (view in UCSC) ,

URS0000EF059E_9606 lncRNA 2004 1

Ensembl: ENST00000666095 (view in UCSC) ,

URS0000EF04BC_9606 lncRNA 1470 1

Ensembl: ENST00000667062 (view in UCSC) ,

DLGAP1-AS3 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for DLGAP1-AS3 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for DLGAP1-AS3 Gene

No ASD Table

Relevant External Links for DLGAP1-AS3 Gene

GeneLoc Exon Structure for
DLGAP1-AS3

Expression for DLGAP1-AS3 Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for DLGAP1-AS3 Gene

mRNA expression in normal human tissues for DLGAP1-AS3 Gene
mRNA expression by GTEx for DLGAP1-AS3 Gene

mRNA differential expression in normal tissues according to GTEx for DLGAP1-AS3 Gene

This gene is overexpressed in Brain - Cortex (x12.5), Brain - Frontal Cortex (BA9) (x10.3), Testis (x5.9), and Brain - Anterior cingulate cortex (BA24) (x5.7).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for DLGAP1-AS3

SOURCE GeneReport for Unigene cluster for DLGAP1-AS3 Gene:

Hs.627208
genes like me logo Genes that share expression patterns with DLGAP1-AS3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for DLGAP1-AS3 Gene

Orthologs for DLGAP1-AS3 Gene

Evolution for DLGAP1-AS3 Gene

ENSEMBL:
Gene Tree for DLGAP1-AS3 (if available)
TreeFam:
Gene Tree for DLGAP1-AS3 (if available)

No data available for Orthologs for DLGAP1-AS3 Gene

Paralogs for DLGAP1-AS3 Gene

No data available for Paralogs for DLGAP1-AS3 Gene

Variants for DLGAP1-AS3 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for DLGAP1-AS3 Gene

SNP ID Clinical significance and condition Chr 18 pos Variation AA Info Type
771503 Benign: not provided 3,879,217(+) G/T SYNONYMOUS_VARIANT
777265 Benign: not provided 3,879,181(+) C/T SYNONYMOUS_VARIANT

Additional dbSNP identifiers (rs#s) for DLGAP1-AS3 Gene

Structural Variations from Database of Genomic Variants (DGV) for DLGAP1-AS3 Gene

Variant ID Type Subtype PubMed ID
dgv134e55 CNV gain 17911159
dgv184n21 CNV gain 19592680
esv2758710 CNV gain 17122850
esv3582947 CNV loss 25503493
nsv2191 CNV deletion 18451855
nsv833582 CNV loss 17160897

Additional Variant Information for DLGAP1-AS3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
DLGAP1-AS3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for DLGAP1-AS3 Gene

Disorders for DLGAP1-AS3 Gene

Additional Disease Information for DLGAP1-AS3

ATLAS of Genetics and Cytogenetics in Oncology and Haematology
Open Targets Platform

No disorders were found for DLGAP1-AS3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for DLGAP1-AS3 Gene

Publications for DLGAP1-AS3 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3
  2. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PMID: 23251661) Comuzzie AG … Butte NF (PloS one 2012) 3

ExternalLinks

View latest publications for DLGAP1-AS3 gene in Mastermind

Products for DLGAP1-AS3 Gene

Sources for DLGAP1-AS3 Gene