Aliases for DLGAP1-AS2 Gene

Subcategory (RNA class) for DLGAP1-AS2 Gene

lncRNA

Number of RNA Genes sources:

4 / 14

Aliases for DLGAP1-AS2 Gene

  • DLGAP1 Antisense RNA 2 2 3 5
  • DLGAP1 Antisense RNA 2 (Non-Protein Coding) 2 3
  • DLGAP1-AS2 2 168
  • HSALNG0119716 167
  • NONHSAG023238 92
  • DLPAP1-AS2 3

External Ids for DLGAP1-AS2 Gene

Summaries for DLGAP1-AS2 Gene

GeneCards Summary for DLGAP1-AS2 Gene

DLGAP1-AS2 (DLGAP1 Antisense RNA 2) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with DLGAP1-AS2 include Astrocytoma and Orofaciodigital Syndrome Viii.

Additional gene information for DLGAP1-AS2 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for DLGAP1-AS2 Gene

Genomics for DLGAP1-AS2 Gene

GeneHancer (GH) Regulatory Elements for DLGAP1-AS2 Gene

Promoters and enhancers for DLGAP1-AS2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J003601 Promoter/Enhancer 2.3 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 23.8 +4.0 3961 11.6 FOXK2 TCF12 POLR2G USF1 JUND TEAD4 FOS ZIC2 POLR2A CLOCK DLGAP1-AS2 DLGAP1-AS1 ENSG00000265399 DLGAP1 LOC105371967
GH18J003591 Promoter/Enhancer 2.4 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 19 -7.0 -7003 9.2 EP300 HNRNPK CTCF SIN3A TCF12 POLR2G SP1 NCOR1 RBAK JUND DLGAP1-AS2 TGIF1 DLGAP1-AS1 DLGAP1
GH18J002633 Promoter/Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 5.3 -964.6 -964593 9.4 ZBTB40 SIN3A EP300 RELA RCOR1 CTCF TCF12 FOXA2 CBFB ZNF384 lnc-SMCHD1-1 METTL4 EMILIN2 NDC80 SMCHD1 DLGAP1-AS2 RF00026-460 RNU6-340P
GH18J003613 Enhancer 1.9 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 +17.4 17439 14.8 EP300 FOXK2 ZNF217 ZNF300 TCF12 POLR2G NCOR1 GTF2E2 JUND FOS TGIF1 MYL12A MYL12B DLGAP1-AS1 RPL21P127 DLGAP1-AS2 LOC105371967 DLGAP1
GH18J003647 Promoter/Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 0.3 +49.4 49430 8.9 HNRNPK TCF12 POLR2G NCOR1 JUND FOS TCF7 FOXA1 ZBTB25 ZNF740 LOC105371967 DLGAP1-AS1 DLGAP1-AS2 DLGAP1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around DLGAP1-AS2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for DLGAP1-AS2 Gene

Genomic Locations for DLGAP1-AS2 Gene
chr18:3,603,000-3,610,089
(GRCh38/hg38)
Size:
7,090 bases
Orientation:
Plus strand
chr18:3,602,998-3,608,334
(GRCh37/hg19)
Size:
5,337 bases
Orientation:
Plus strand

Genomic View for DLGAP1-AS2 Gene

Genes around DLGAP1-AS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
DLGAP1-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DLGAP1-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DLGAP1-AS2 Gene

Proteins for DLGAP1-AS2 Gene

Post-translational modifications for DLGAP1-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for DLGAP1-AS2 Gene

Domains & Families for DLGAP1-AS2 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for DLGAP1-AS2 Gene

Function for DLGAP1-AS2 Gene

Phenotypes From GWAS Catalog for DLGAP1-AS2 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for DLGAP1-AS2 Gene

Localization for DLGAP1-AS2 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for DLGAP1-AS2 gene
Compartment Confidence
extracellular 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for DLGAP1-AS2 Gene

Pathways & Interactions for DLGAP1-AS2 Gene

PathCards logo

SuperPathways for DLGAP1-AS2 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for DLGAP1-AS2 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for DLGAP1-AS2 Gene

Drugs & Compounds for DLGAP1-AS2 Gene

No Compound Related Data Available

Transcripts for DLGAP1-AS2 Gene

mRNA/cDNA for DLGAP1-AS2 Gene

7 RNACentral transcripts :
2 REFSEQ mRNAs :
6 NCBI additional mRNA sequence :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
4 NONCODE transcripts :
1 ENA transcripts :
4 LncBook transcripts :
6 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for DLGAP1-AS2 Gene

No ASD Table

Relevant External Links for DLGAP1-AS2 Gene

GeneLoc Exon Structure for
DLGAP1-AS2

Expression for DLGAP1-AS2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for DLGAP1-AS2 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for DLGAP1-AS2

SOURCE GeneReport for Unigene cluster for DLGAP1-AS2 Gene:

Hs.659053
genes like me logo Genes that share expression patterns with DLGAP1-AS2: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for DLGAP1-AS2 Gene

Orthologs for DLGAP1-AS2 Gene

Evolution for DLGAP1-AS2 Gene

ENSEMBL:
Gene Tree for DLGAP1-AS2 (if available)
TreeFam:
Gene Tree for DLGAP1-AS2 (if available)

No data available for Orthologs for DLGAP1-AS2 Gene

Paralogs for DLGAP1-AS2 Gene

No data available for Paralogs for DLGAP1-AS2 Gene

Variants for DLGAP1-AS2 Gene

Additional dbSNP identifiers (rs#s) for DLGAP1-AS2 Gene

Structural Variations from Database of Genomic Variants (DGV) for DLGAP1-AS2 Gene

Variant ID Type Subtype PubMed ID
dgv184n21 CNV gain 19592680
esv2490559 CNV insertion 19546169

Additional Variant Information for DLGAP1-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
DLGAP1-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for DLGAP1-AS2 Gene

Disorders for DLGAP1-AS2 Gene

MalaCards: The human disease database

(2) MalaCards diseases for DLGAP1-AS2 Gene - From: LncRNADisease and DISEASES

Disorder Aliases PubMed IDs
astrocytoma
  • astrocytic tumor
orofaciodigital syndrome viii
  • cleft lip/palate with abnormal thumbs and microcephaly
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for DLGAP1-AS2

genes like me logo Genes that share disorders with DLGAP1-AS2: view

No data available for UniProtKB/Swiss-Prot and Genatlas for DLGAP1-AS2 Gene

Publications for DLGAP1-AS2 Gene

  1. Interactions of pathological hallmark proteins: tubulin polymerization promoting protein/p25, beta-amyloid, and alpha-synuclein. (PMID: 21832049) Oláh J … Ovádi J (The Journal of biological chemistry 2011) 3 54
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54
  4. LncRNA DLGAP1-AS2 modulates glioma development by up-regulating YAP1 expression. (PMID: 31899508) Miao W … Cheng H (Journal of biochemistry 2020) 3

Products for DLGAP1-AS2 Gene

Sources for DLGAP1-AS2 Gene