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DLGAP1-AS2 Gene(RNA Gene)

DLGAP1 Antisense RNA 2

GCID:
GC18P003603
GIFtS:
14
Genes Participants
UDN Logo

Aliases for DLGAP1-AS2 Gene

Subcategory (RNA class) for DLGAP1-AS2 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for DLGAP1-AS2 Gene

  • DLGAP1 Antisense RNA 2 2 3 5
  • DLGAP1 Antisense RNA 2 (Non-Protein Coding) 2 3

External Ids for DLGAP1-AS2 Gene

Summaries for DLGAP1-AS2 Gene

GeneCards Summary for DLGAP1-AS2 Gene

DLGAP1-AS2 (DLGAP1 Antisense RNA 2) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for DLGAP1-AS2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DLGAP1-AS2 Gene

Genomics for DLGAP1-AS2 Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for DLGAP1-AS2 Gene

Promoters and enhancers for DLGAP1-AS2 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH18J003601 Promoter/Enhancer 2 FANTOM5 Ensembl ENCODE dbSUPER 23.9 +4.0 3961 11.6 PKNOX1 CLOCK SMAD1 FOXA2 MLX ZFP64 ARID4B SIN3A FEZF1 DMAP1 DLGAP1-AS2 CBX3P2 MYL12B DLGAP1-AS1 LOC101927044 DLGAP1 LOC105371967
GH18J003591 Promoter/Enhancer 2.1 FANTOM5 Ensembl ENCODE dbSUPER 19 -7.0 -7003 9.2 HDGF PKNOX1 SMAD1 FOXA2 MLX ARID4B SIN3A FEZF1 YY1 ZNF143 DLGAP1-AS2 TGIF1 DLGAP1-AS1 SMCHD1 CBX3P2 MYL12B DLGAP1
GH18J002633 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 5.3 -964.6 -964593 9.4 FOXA2 BMI1 BATF IRF4 RAD21 ZNF766 ATF7 ETV6 BCLAF1 IKZF2 METTL4 EMILIN2 NDC80 SMCHD1 DLGAP1-AS2 GC18M002649 RNU6-340P ENSG00000202224 GC18M002508
GH18J003615 Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +18.5 18476 12.7 MLX DMAP1 YY1 NFYC MEF2D SSRP1 GLIS1 RCOR2 NBN KDM1A TGIF1 MYL12A MYL12B DLGAP1-AS1 RPL21P127 SMCHD1 CBX3P2 DLGAP1-AS2 LOC105371967 DLGAP1
GH18J003647 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.2 +49.4 49430 8.9 SMAD1 FOXA2 SIN3A FOS SP3 KAT8 MEF2D RCOR2 HMBOX1 KDM1A LOC105371967 DLGAP1-AS1 DLGAP1-AS2 DLGAP1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around DLGAP1-AS2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for DLGAP1-AS2 Gene

Genomic Locations for DLGAP1-AS2 Gene
chr18:3,603,000-3,610,089
(GRCh38/hg38)
Size:
7,090 bases
Orientation:
Plus strand
chr18:3,602,998-3,608,334
(GRCh37/hg19)

Genomic View for DLGAP1-AS2 Gene

Genes around DLGAP1-AS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
DLGAP1-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DLGAP1-AS2 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for DLGAP1-AS2 Gene

Proteins for DLGAP1-AS2 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for DLGAP1-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for DLGAP1-AS2 Gene

Domains & Families for DLGAP1-AS2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for DLGAP1-AS2 Gene

Function for DLGAP1-AS2 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for DLGAP1-AS2 Gene

Localization for DLGAP1-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for DLGAP1-AS2 Gene

Pathways & Interactions for DLGAP1-AS2 Gene

SuperPathways for DLGAP1-AS2 Gene

PathCards logo More details on SuperPathways for DLGAP1-AS2
No Data Available

Interacting Proteins for DLGAP1-AS2 Gene

Gene Ontology (GO) - Biological Process for DLGAP1-AS2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for DLGAP1-AS2 Gene

Drugs & Compounds for DLGAP1-AS2 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for DLGAP1-AS2 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for DLGAP1-AS2 Gene

(7) Additional mRNA sequences :
(1) REFSEQ mRNAs :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(3) RNA Central transcripts :

Unigene Clusters for DLGAP1-AS2 Gene

DLGAP1 antisense RNA 2:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for DLGAP1-AS2 Gene

No ASD Table

Relevant External Links for DLGAP1-AS2 Gene

GeneLoc Exon Structure for
DLGAP1-AS2
ECgene alternative splicing isoforms for
DLGAP1-AS2

Expression for DLGAP1-AS2 Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for DLGAP1-AS2 Gene

mRNA expression in normal human tissues for DLGAP1-AS2 Gene
mRNA expression by GTEx for DLGAP1-AS2 Gene

SOURCE GeneReport for Unigene cluster for DLGAP1-AS2 Gene:

Hs.659053
genes like me logo Genes that share expression patterns with DLGAP1-AS2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for DLGAP1-AS2 Gene

Orthologs for DLGAP1-AS2 Gene

Evolution for DLGAP1-AS2 Gene

ENSEMBL:
Gene Tree for DLGAP1-AS2 (if available)
TreeFam:
Gene Tree for DLGAP1-AS2 (if available)

No data available for Orthologs for DLGAP1-AS2 Gene

Paralogs for DLGAP1-AS2 Gene

No data available for Paralogs for DLGAP1-AS2 Gene

Variants for DLGAP1-AS2 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Sequence variations from dbSNP and Humsavar for DLGAP1-AS2 Gene

SNP ID Clin Chr 18 pos Variation AA Info Type
rs1000212952 -- 3,601,915(+) A/C upstream_transcript_variant
rs1000269150 -- 3,607,861(+) A/G intron_variant
rs1000414562 -- 3,602,233(+) C/G upstream_transcript_variant
rs1000452796 -- 3,607,562(+) G/A intron_variant
rs1000551939 -- 3,602,884(+) T/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for DLGAP1-AS2 Gene

Variant ID Type Subtype PubMed ID
dgv184n21 CNV gain 19592680
esv2490559 CNV insertion 19546169

Additional Variant Information for DLGAP1-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
DLGAP1-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for DLGAP1-AS2 Gene

Disorders for DLGAP1-AS2 Gene

Additional Disease Information for DLGAP1-AS2

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for DLGAP1-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for DLGAP1-AS2 Gene

Publications for DLGAP1-AS2 Gene

  1. Interactions of pathological hallmark proteins: tubulin polymerization promoting protein/p25, beta-amyloid, and alpha-synuclein. (PMID: 21832049) Oláh J … Ovádi J (The Journal of biological chemistry 2011) 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for DLGAP1-AS2 Gene

Sources for DLGAP1-AS2 Gene

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