Aliases for DISC1-IT1 Gene

Subcategory (RNA class) for DISC1-IT1 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for DISC1-IT1 Gene

  • DISC1 Intronic Transcript 1 2 3 5
  • DISC1 Intronic Transcript 1 (Non-Protein Coding) 2 3
  • DISC1-IT1 2 170
  • HSALNG0011465 169
  • NONHSAG004629 94

External Ids for DISC1-IT1 Gene

Previous GeneCards Identifiers for DISC1-IT1 Gene

  • GC00U933379
  • GC01P232062

Summaries for DISC1-IT1 Gene

GeneCards Summary for DISC1-IT1 Gene

DISC1-IT1 (DISC1 Intronic Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for DISC1-IT1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for DISC1-IT1 Gene

Genomics for DISC1-IT1 Gene

GeneHancer (GH) Regulatory Elements for DISC1-IT1 Gene

Promoters and enhancers for DISC1-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J231926 Enhancer 0.2 Ensembl 750.6 -0.3 -333 0.2 DISC1-IT1 lnc-SIPA1L2-13 DISC1 TSNAX-DISC1
GH01J231925 Enhancer 1 Ensembl ENCODE CraniofacialAtlas 0.6 +3.5 3451 5.4 CTCF ZNF280D PRDM1 ZIC2 NFE2L2 POLR2A ZNF561 NFE2 ZNF580 TRIM28 ARV1 DISC1-IT1 piR-36588-031 DISC1 TSNAX-DISC1
GH01J231933 Enhancer 1.3 FANTOM5 Ensembl ENCODE CraniofacialAtlas 0.4 +10.2 10208 4.7 SMARCE1 NR2F6 HLF TEAD4 NFIB MLLT1 CBFA2T2 SMARCA4 ZNF639 DPF2 FAM89A DISC1 DISC1-IT1 piR-36588-031 TSNAX-DISC1
GH01J231917 Enhancer 0.9 Ensembl ENCODE CraniofacialAtlas 0.4 -7.3 -7298 12.3 ETV6 ZNF512 ZNF561 ZSCAN5C EED RUNX3 POLR2A ZFHX2 ZNF366 ZNF664 lnc-SIPA1L2-13 DISC1-IT1 DISC1 TSNAX-DISC1
GH01J231940 Enhancer 0.8 Ensembl ENCODE 0.4 +15.4 15441 2.3 GLIS2 ZIC2 PRDM10 PATZ1 ZNF585B ZNF561 ZSCAN5C OSR2 ZBTB17 ZSCAN18 FAM89A DISC1-IT1 piR-36588-031 DISC1 TSNAX-DISC1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around DISC1-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for DISC1-IT1 Gene

Genomic Locations for DISC1-IT1 Gene
chr1:231,925,834-231,945,233
(GRCh38/hg38)
Size:
19,400 bases
Orientation:
Plus strand
chr1:232,061,580-232,080,979
(GRCh37/hg19)
Size:
19,400 bases
Orientation:
Plus strand

Genomic View for DISC1-IT1 Gene

Genes around DISC1-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
DISC1-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DISC1-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DISC1-IT1 Gene

Proteins for DISC1-IT1 Gene

Post-translational modifications for DISC1-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for DISC1-IT1 Gene

Domains & Families for DISC1-IT1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for DISC1-IT1 Gene

Function for DISC1-IT1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for DISC1-IT1 Gene

Localization for DISC1-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for DISC1-IT1 Gene

Pathways & Interactions for DISC1-IT1 Gene

PathCards logo

SuperPathways for DISC1-IT1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for DISC1-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for DISC1-IT1 Gene

Drugs & Compounds for DISC1-IT1 Gene

No Compound Related Data Available

Transcripts for DISC1-IT1 Gene

mRNA/cDNA for DISC1-IT1 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNACentral transcripts :
(2) LNCipedia transcripts :
(1) NONCODE transcripts :
(2) LncBook transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for DISC1-IT1 Gene

No ASD Table

Relevant External Links for DISC1-IT1 Gene

GeneLoc Exon Structure for
DISC1-IT1
ECgene alternative splicing isoforms for
DISC1-IT1

Expression for DISC1-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for DISC1-IT1 Gene

genes like me logo Genes that share expression patterns with DISC1-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for DISC1-IT1 Gene

Orthologs for DISC1-IT1 Gene

Evolution for DISC1-IT1 Gene

ENSEMBL:
Gene Tree for DISC1-IT1 (if available)
TreeFam:
Gene Tree for DISC1-IT1 (if available)

No data available for Orthologs for DISC1-IT1 Gene

Paralogs for DISC1-IT1 Gene

No data available for Paralogs for DISC1-IT1 Gene

Variants for DISC1-IT1 Gene

Sequence variations from dbSNP and Humsavar for DISC1-IT1 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000049432 -- 231,938,836(+) T/C intron_variant
rs1000100131 -- 231,938,546(+) T/C intron_variant
rs1000233481 -- 231,932,931(+) C/A/T intron_variant
rs1000262908 -- 231,937,790(+) G/T intron_variant
rs1000390054 -- 231,926,184(+) T/C intron_variant

Additional Variant Information for DISC1-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
DISC1-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for DISC1-IT1 Gene

Disorders for DISC1-IT1 Gene

Additional Disease Information for DISC1-IT1

No disorders were found for DISC1-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for DISC1-IT1 Gene

Publications for DISC1-IT1 Gene

No publications were found for DISC1-IT1 Gene.

No data available for External Links for DISC1-IT1 Gene

Products for DISC1-IT1 Gene

Sources for DISC1-IT1 Gene