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Aliases for DIP2A-IT1 Gene

Subcategory (RNA class) for DIP2A-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for DIP2A-IT1 Gene

  • DIP2A Intronic Transcript 1 2 3 5
  • DIP2A Intronic Transcript 1 (Non-Protein Coding) 2 3

External Ids for DIP2A-IT1 Gene

Previous GeneCards Identifiers for DIP2A-IT1 Gene

  • GC00U933293
  • GC21P047883

Summaries for DIP2A-IT1 Gene

GeneCards Summary for DIP2A-IT1 Gene

DIP2A-IT1 (DIP2A Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for DIP2A-IT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DIP2A-IT1 Gene

Genomics for DIP2A-IT1 Gene

GeneHancer (GH) Regulatory Elements for DIP2A-IT1 Gene

Promoters and enhancers for DIP2A-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21J046499 Enhancer 0.9 Ensembl ENCODE 11.8 +38.6 38550 2.1 HDGF BCOR ELF3 LEF1 SAP130 BACH1 BATF E4F1 FOSL1 GATA3 MCM3AP DIP2A-IT1 DIP2A PRMT2 RNU6-396P
GH21J046252 Enhancer 0.9 ENCODE 10.1 -208.4 -208402 2.2 HDGF PKNOX1 ARNT ZNF766 ATF7 RUNX3 SP3 NCOA1 ZNF592 SREBF1 ENSG00000239415 YBEY MCM3AP-AS1 LSS C21orf58 PCNT ENSG00000223901 FTCD DIP2A DIP2A-IT1
GH21J046514 Enhancer 0.7 Ensembl ENCODE 12.1 +52.8 52838 1.2 SP1 NFIC ZNF362 RXRA HNF4A RAD21 SPI1 DIP2A DIP2A-IT1 MCM3AP-AS1 MCM3AP S100B RNU6-396P
GH21J046508 Enhancer 0.6 ENCODE 12.3 +47.6 47552 2.3 DRAP1 GATAD2A KLF1 TFE3 FOXA2 NFIA SAP130 FOXA3 KLF17 RAD21 DIP2A-IT1 DIP2A S100B PRMT2 SPATC1L YBEY RNU6-396P
GH21J046541 Enhancer 0.4 dbSUPER 11.7 +79.6 79628 2.2 POLR2A ZNF692 ATF2 DIP2A S100B SPATC1L MCM3AP DIP2A-IT1 MCM3AP-AS1 RNU6-396P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around DIP2A-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for DIP2A-IT1 Gene

Genomic Locations for DIP2A-IT1 Gene
chr21:46,462,471-46,469,306
(GRCh38/hg38)
Size:
6,836 bases
Orientation:
Plus strand
chr21:47,882,384-47,889,219
(GRCh37/hg19)
Size:
6,836 bases
Orientation:
Plus strand

Genomic View for DIP2A-IT1 Gene

Genes around DIP2A-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
DIP2A-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DIP2A-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DIP2A-IT1 Gene

Proteins for DIP2A-IT1 Gene

Post-translational modifications for DIP2A-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for DIP2A-IT1 Gene

Domains & Families for DIP2A-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for DIP2A-IT1 Gene

Function for DIP2A-IT1 Gene

Phenotypes From GWAS Catalog for DIP2A-IT1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for DIP2A-IT1 Gene

Localization for DIP2A-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for DIP2A-IT1 Gene

Pathways & Interactions for DIP2A-IT1 Gene

SuperPathways for DIP2A-IT1 Gene

No Data Available

Interacting Proteins for DIP2A-IT1 Gene

Gene Ontology (GO) - Biological Process for DIP2A-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for DIP2A-IT1 Gene

Drugs & Compounds for DIP2A-IT1 Gene

No Compound Related Data Available

Transcripts for DIP2A-IT1 Gene

mRNA/cDNA for DIP2A-IT1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Unigene Clusters for DIP2A-IT1 Gene

DIP2A intronic transcript 1 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for DIP2A-IT1 Gene

No ASD Table

Relevant External Links for DIP2A-IT1 Gene

GeneLoc Exon Structure for
DIP2A-IT1
ECgene alternative splicing isoforms for
DIP2A-IT1

Expression for DIP2A-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for DIP2A-IT1 Gene

SOURCE GeneReport for Unigene cluster for DIP2A-IT1 Gene:

Hs.737163
genes like me logo Genes that share expression patterns with DIP2A-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for DIP2A-IT1 Gene

Orthologs for DIP2A-IT1 Gene

Evolution for DIP2A-IT1 Gene

ENSEMBL:
Gene Tree for DIP2A-IT1 (if available)
TreeFam:
Gene Tree for DIP2A-IT1 (if available)

No data available for Orthologs for DIP2A-IT1 Gene

Paralogs for DIP2A-IT1 Gene

No data available for Paralogs for DIP2A-IT1 Gene

Variants for DIP2A-IT1 Gene

Sequence variations from dbSNP and Humsavar for DIP2A-IT1 Gene

SNP ID Clin Chr 21 pos Variation AA Info Type
rs1000776687 -- 46,461,141(+) AAAAAAAA/AAAAA upstream_transcript_variant
rs1000824608 -- 46,467,745(+) G/T intron_variant
rs1001225576 -- 46,461,390(+) T/C upstream_transcript_variant
rs1001277830 -- 46,469,434(+) G/C downstream_transcript_variant
rs1001285485 -- 46,465,561(+) T/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for DIP2A-IT1 Gene

Variant ID Type Subtype PubMed ID
esv2762115 CNV loss 21179565
nsv459312 CNV gain 19166990
nsv470910 CNV gain 18288195
nsv587998 CNV gain 21841781

Additional Variant Information for DIP2A-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
DIP2A-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for DIP2A-IT1 Gene

Disorders for DIP2A-IT1 Gene

Additional Disease Information for DIP2A-IT1

No disorders were found for DIP2A-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for DIP2A-IT1 Gene

Publications for DIP2A-IT1 Gene

  1. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 58

Products for DIP2A-IT1 Gene

Sources for DIP2A-IT1 Gene

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