Free for academic non-profit institutions. Other users need a Commercial license

Aliases for DIAPH3-AS1 Gene

Subcategory (RNA class) for DIAPH3-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for DIAPH3-AS1 Gene

  • DIAPH3 Antisense RNA 1 2 3 5
  • DIAPH3 Antisense RNA 1 (Non-Protein Coding) 2 3

External Ids for DIAPH3-AS1 Gene

Previous GeneCards Identifiers for DIAPH3-AS1 Gene

  • GC00U933694
  • GC13P060587

Summaries for DIAPH3-AS1 Gene

GeneCards Summary for DIAPH3-AS1 Gene

DIAPH3-AS1 (DIAPH3 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for DIAPH3-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DIAPH3-AS1 Gene

Genomics for DIAPH3-AS1 Gene

GeneHancer (GH) Regulatory Elements for DIAPH3-AS1 Gene

Promoters and enhancers for DIAPH3-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13J060011 Promoter/Enhancer 0.9 EPDnew ENCODE 650.7 -0.1 -126 1.6 OSR2 JUND FOS DIAPH3 DIAPH3-AS1 GC13P059869
GH13J060019 Enhancer 0.7 Ensembl ENCODE 0.4 +7.0 7017 1.1 SP1 ZNF766 FOXA2 CEBPG HNF4A DIAPH3 DIAPH3-AS1 RN7SL375P GC13M060035
GH13J060009 Enhancer 0.3 ENCODE 0.7 -3.1 -3126 1 PRDM1 DIAPH3-AS1 GC13P059869 DIAPH3
GH13J060000 Enhancer 0.4 ENCODE 0.4 -11.4 -11358 1.2 CEBPB CEBPG DIAPH3 DIAPH3-AS1 GC13P059869
GH13J060001 Enhancer 0.4 ENCODE 0.4 -10.7 -10696 0.2 CEBPB CEBPG DIAPH3 DIAPH3-AS1 GC13P059869
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around DIAPH3-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for DIAPH3-AS1 Gene

Genomic Locations for DIAPH3-AS1 Gene
chr13:60,012,718-60,044,357
(GRCh38/hg38)
Size:
31,640 bases
Orientation:
Plus strand
chr13:60,586,885-60,618,491
(GRCh37/hg19)
Size:
31,607 bases
Orientation:
Plus strand

Genomic View for DIAPH3-AS1 Gene

Genes around DIAPH3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
DIAPH3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DIAPH3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DIAPH3-AS1 Gene

Proteins for DIAPH3-AS1 Gene

Post-translational modifications for DIAPH3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for DIAPH3-AS1 Gene

Domains & Families for DIAPH3-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for DIAPH3-AS1 Gene

Function for DIAPH3-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for DIAPH3-AS1 Gene

Localization for DIAPH3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for DIAPH3-AS1 Gene

Pathways & Interactions for DIAPH3-AS1 Gene

SuperPathways for DIAPH3-AS1 Gene

No Data Available

Interacting Proteins for DIAPH3-AS1 Gene

Gene Ontology (GO) - Biological Process for DIAPH3-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for DIAPH3-AS1 Gene

Drugs & Compounds for DIAPH3-AS1 Gene

No Compound Related Data Available

Transcripts for DIAPH3-AS1 Gene

mRNA/cDNA for DIAPH3-AS1 Gene

(3) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(8) RNA Central transcripts :

Unigene Clusters for DIAPH3-AS1 Gene

DIAPH3 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for DIAPH3-AS1 Gene

No ASD Table

Relevant External Links for DIAPH3-AS1 Gene

GeneLoc Exon Structure for
DIAPH3-AS1
ECgene alternative splicing isoforms for
DIAPH3-AS1

Expression for DIAPH3-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for DIAPH3-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for DIAPH3-AS1 Gene

This gene is overexpressed in Testis (x31.5).

SOURCE GeneReport for Unigene cluster for DIAPH3-AS1 Gene:

Hs.664101
genes like me logo Genes that share expression patterns with DIAPH3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for DIAPH3-AS1 Gene

Orthologs for DIAPH3-AS1 Gene

Evolution for DIAPH3-AS1 Gene

ENSEMBL:
Gene Tree for DIAPH3-AS1 (if available)
TreeFam:
Gene Tree for DIAPH3-AS1 (if available)

No data available for Orthologs for DIAPH3-AS1 Gene

Paralogs for DIAPH3-AS1 Gene

No data available for Paralogs for DIAPH3-AS1 Gene

Variants for DIAPH3-AS1 Gene

Sequence variations from dbSNP and Humsavar for DIAPH3-AS1 Gene

SNP ID Clin Chr 13 pos Variation AA Info Type
rs1000071992 -- 60,043,366(+) A/C genic_downstream_transcript_variant, intron_variant
rs1000143008 -- 60,015,058(+) C/T intron_variant
rs1000156650 -- 60,028,453(+) C/T genic_downstream_transcript_variant, intron_variant
rs1000193204 -- 60,037,454(+) A/G genic_downstream_transcript_variant, intron_variant
rs1000221197 -- 60,037,220(+) C/T genic_downstream_transcript_variant, intron_variant

Structural Variations from Database of Genomic Variants (DGV) for DIAPH3-AS1 Gene

Variant ID Type Subtype PubMed ID
esv1720162 CNV insertion 17803354
nsv561861 CNV loss 21841781
nsv561862 CNV loss 21841781
nsv832622 CNV gain+loss 17160897

Additional Variant Information for DIAPH3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
DIAPH3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for DIAPH3-AS1 Gene

Disorders for DIAPH3-AS1 Gene

Additional Disease Information for DIAPH3-AS1

No disorders were found for DIAPH3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for DIAPH3-AS1 Gene

Publications for DIAPH3-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for DIAPH3-AS1 Gene

Sources for DIAPH3-AS1 Gene

Content
Loading form....