Aliases for DHX16 Gene
Aliases for DHX16 Gene
- DEAH-Box Helicase 16 2 3 5
- DEAD/H (Asp-Glu-Ala-Asp/His) Box Polypeptide 16 2 3
- DEAH (Asp-Glu-Ala-His) Box Polypeptide 16 2 3
- ATP-Dependent RNA Helicase #3 3 4
- DEAH-Box Protein 16 3 4
- DDX16 3 4
- DBP2 3 4
- Putative Pre-MRNA-Splicing Factor ATP-Dependent RNA Helicase DHX16 3
- Pre-MRNA-Splicing Factor ATP-Dependent RNA Helicase DHX16 3
- DEAD/H Box 16 3
External Ids for DHX16 Gene
- HGNC: 2739
- Entrez Gene: 8449
- Ensembl: ENSG00000204560
- OMIM: 603405
- UniProtKB: O60231
Previous HGNC Symbols for DHX16 Gene
- DDX16
Previous GeneCards Identifiers for DHX16 Gene
- GC06M030391
- GC06M030727
- GC06M030728
Summaries for DHX16 Gene
-
DEAD box proteins, characterized by the conserved motif Asp-Glu-Ala-Asp (DEAD), are putative RNA helicases. They are implicated in a number of cellular processes involving alteration of RNA secondary structure such as translation initiation, nuclear and mitochondrial splicing, and ribosome and spliceosome assembly. Based on their distribution patterns, some members of this family are believed to be involved in embryogenesis, spermatogenesis, and cellular growth and division. This gene encodes a DEAD box protein, which is a functional homolog of fission yeast Prp8 protein involved in cell cycle progression. This gene is mapped to the MHC region on chromosome 6p21.3, a region where many malignant, genetic and autoimmune disease genes are linked. Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Aug 2009]
GeneCards Summary for DHX16 Gene
DHX16 (DEAH-Box Helicase 16) is a Protein Coding gene. Among its related pathways are mRNA Splicing - Major Pathway and Gene Expression. Gene Ontology (GO) annotations related to this gene include nucleic acid binding and helicase activity. An important paralog of this gene is DHX8.
UniProtKB/Swiss-Prot for DHX16 Gene
-
Involved in pre-mRNA splicing. Contributes to pre-mRNA splicing after spliceosome formation and prior to the first transesterification reaction.
No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DHX16 Gene
Genomics for DHX16 Gene
GeneHancer (GH) Regulatory Elements for DHX16 Gene
Promoters and enhancers for DHX16 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)
GeneHancers around DHX16 on UCSC Golden Path with GeneCards custom track
- Top Transcription factor binding sites by QIAGEN in the DHX16 gene promoter:
-
- ARP-1
- Max
- c-Myc
- Hand1
- E47
- TBP
- NF-kappaB
- NF-kappaB1
- NF-kappaB2
- AML1a
Regulatory Element Products
Genomic Locations for DHX16 Gene
Genomic Locations for DHX16 Gene
- chr6:30,653,119-30,673,053
- (GRCh38/hg38)
- Size:
- 19,935 bases
- Orientation:
- Minus strand
- chr6:30,620,896-30,640,830
- (GRCh37/hg19)
- Size:
- 19,935 bases
- Orientation:
- Minus strand
Genomic View for DHX16 Gene
Genes around DHX16 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 6p21.33 by Entrez Gene
- 6p21.33 by HGNC
- 6p21.33 by Ensembl
DHX16 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for DHX16 Gene
Proteins for DHX16 Gene
-
Protein details for DHX16 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- O60231-DHX16_HUMAN
- Recommended name:
- Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
- Protein Accession:
- O60231
- O60322
- Q5JP45
- Q969X7
- Q96QC1
Protein attributes for DHX16 Gene
- Size:
- 1041 amino acids
- Molecular mass:
- 119264 Da
- Quaternary structure:
-
- Interacts with GPKOW.
- SequenceCaution:
-
- Sequence=BAA25503.2; Type=Erroneous initiation; Evidence={ECO:0000305};
Protein Expression for DHX16 Gene
Post-translational modifications for DHX16 Gene
Other Protein References for DHX16 Gene
- ENSEMBL proteins:
- REFSEQ proteins:
Antibody Products
-
Custom Antibody ServicesOriGene Antibodies for DHX16
- Novus Biologicals Antibodies for DHX16
-
Abcam antibodies for DHX16
- Invitrogen Antibodies for DHX16 (AFLGC-DHX16)
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-
Boster Bio Antibodies for DHX16
-
Santa Cruz Biotechnology (SCBT) Antibodies for DHX16
Protein Products
-
OriGene Purified Proteins for DHX16
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- antibodies-online: Search results for 4 available DHX16 Proteins ranked by validation data
- Compare Top DHX16 Proteins
-
Quality Products:
- Search GeneTex for Proteins for DHX16
-
Abcam proteins for DHX16
Assay Products
No data available for DME Specific Peptides for DHX16 Gene
Domains & Families for DHX16 Gene
Gene Families for DHX16 Gene
- HGNC:
- Human Protein Atlas (HPA):
-
- Enzymes
- Predicted intracellular proteins
Protein Domains for DHX16 Gene
Suggested Antigen Peptide Sequences for DHX16 Gene
- GenScript: Design optimal peptide antigens:
Graphical View of Domain Structure for InterPro Entry
O60231UniProtKB/Swiss-Prot:
DHX16_HUMAN :- Belongs to the DEAD box helicase family. DEAH subfamily. DDX16/PRP8 sub-subfamily.
- Family:
-
- Belongs to the DEAD box helicase family. DEAH subfamily. DDX16/PRP8 sub-subfamily.
Function for DHX16 Gene
Molecular function for DHX16 Gene
- UniProtKB/Swiss-Prot Function:
- Involved in pre-mRNA splicing. Contributes to pre-mRNA splicing after spliceosome formation and prior to the first transesterification reaction.
- UniProtKB/Swiss-Prot CatalyticActivity:
- ATP + H(2)O = ADP + phosphate.
Enzyme Numbers (IUBMB) for DHX16 Gene
Phenotypes From GWAS Catalog for DHX16 Gene
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0003676 | nucleic acid binding | IEA | -- |
| GO:0003723 | RNA binding | IBA | -- |
| GO:0003724 | RNA helicase activity | TAS | 9547260 |
| GO:0004004 | ATP-dependent RNA helicase activity | IBA | -- |
| GO:0004386 | helicase activity | IEA | -- |
Phenotypes for DHX16 Gene
- GenomeRNAi human phenotypes for DHX16:
Animal Model Products
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-
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-
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-
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-
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- GenScript: Design CRISPR guide RNA sequences for DHX16
miRNA for DHX16 Gene
- miRTarBase miRNAs that target DHX16
miRNA Products
Inhibitory RNA Products
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Clone Products
- Sino Biological Human cDNA Clone for DHX16
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles and/or promoter clone products for DHX16
- genomics-online: cdna clones - Search results for available DHX16 gene related products
- orf clones - Search results for available DHX16 gene related products
- Applied Biological Materials Clones for DHX16
-
Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more
No data available for Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for DHX16 Gene
Localization for DHX16 Gene
Subcellular locations from UniProtKB/Swiss-Prot for DHX16 Gene
- Nucleus. Nucleus, nucleoplasm.
| Compartment | Confidence |
|---|---|
| nucleus | 5 |
| cytosol | 2 |
- Nucleoplasm (3)
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0005634 | nucleus | IDA,TAS | 20423332 |
| GO:0005654 | nucleoplasm | TAS | -- |
| GO:0005681 | spliceosomal complex | IBA,IDA | 25296192 |
| GO:0005737 | cytoplasm | IBA | -- |
Pathways & Interactions for DHX16 Gene
| SuperPathway | Contained pathways | ||
|---|---|---|---|
| 1 | mRNA Splicing - Major Pathway |
.79
|
.50
.41
|
| 2 | Gene Expression |
.48
|
|
Pathways by source for DHX16 Gene
1 BioSystems pathway for DHX16 Gene
4 Reactome pathways for DHX16 Gene
1 KEGG pathway for DHX16 Gene
Interacting Proteins for DHX16 Gene
Selected Interacting proteins:
O60231-DHX16_HUMAN
ENSP00000365625
for DHX16 Gene via
UniProtKB
MINT
STRING
IID
GPS-Prot Interaction Network for DHX16
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0000398 | mRNA splicing, via spliceosome | TAS | -- |
| GO:0006396 | RNA processing | IBA | -- |
| GO:0006397 | mRNA processing | IEA | -- |
| GO:0008380 | RNA splicing | TAS | 9547260 |
No data available for SIGNOR curated interactions for DHX16 Gene
Drugs & Compounds for DHX16 Gene
| Name | Synonyms | Role | CAS Number | PubChem IDs | PubMed IDs | |
|---|---|---|---|---|---|---|
| ADP |
|
Full agonist, Agonist, Partial agonist, Antagonist, Gating inhibitor | 58-64-0 |
|
Drug Products
Transcripts for DHX16 Gene
mRNA/cDNA for DHX16 Gene
- (6) REFSEQ mRNAs :
- (7) Additional mRNA sequences :
- (19) Selected AceView cDNA sequences:
- (4) Ensembl transcripts including schematic representations, and UCSC links where relevant :
-
- ENST00000376437 1933 bps (uc003nqy.3)
- ENST00000376442 3445 bps (uc003nqz.4)
- ENST00000480966 797 bps (uc063mtk.1)
- ENST00000415603 892 bps (uc063mtl.1)
Unigene Clusters for DHX16 Gene
CRISPR Products
-
OriGene CRISPR knockouts for DHX16
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- genomics-online: gRNA clones - Search results for available DHX16 gene related products
- Applied Biological Materials CRISPR for DHX16
-
Vectors and viruses for KO, Activation, Repression, and more
-
Santa Cruz Biotechnology (SCBT) CRISPR for DHX16
- GenScript: Design CRISPR guide RNA sequences for DHX16
miRNA Products
Inhibitory RNA Products
- Origene shrna, sirna, and RNAi products in human, mouse, rat for DHX16
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- Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for DHX16
- genomics-online: shRNA clones - Search results for available DHX16 gene related products
Clone Products
- Sino Biological Human cDNA Clone for DHX16
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles and/or promoter clone products for DHX16
- genomics-online: cdna clones - Search results for available DHX16 gene related products
- orf clones - Search results for available DHX16 gene related products
- Applied Biological Materials Clones for DHX16
-
Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more
Expression for DHX16 Gene
This gene is overexpressed in Peripheral blood mononuclear cells (16.1), Cerebrospinal fluid (9.7), and Plasma (8.2).
Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for DHX16 Gene
- Elite partner
NURSA nuclear receptor signaling pathways regulating expression of DHX16 Gene:
DHX16SOURCE GeneReport for Unigene cluster for DHX16 Gene:
Hs.485060Evidence on tissue expression from TISSUES for DHX16 Gene
- Nervous system(4.7)
- Liver(4.3)
- Blood(2.3)
Primer Products
-
OriGene qPCR primer pairs for DHX16
-
OriGene qPCR primer pairs and template standards for DHX16
- genomics-online: primer clones - Search results for available DHX16 gene related products
Gene Expression Assay Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for DHX16 Gene
Orthologs for DHX16 Gene
This gene was present in the common ancestor of eukaryotes.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| chimpanzee (Pan troglodytes) |
Mammalia | DHX16 34 33 |
|
OneToOne | |
| oppossum (Monodelphis domestica) |
Mammalia | DHX16 34 |
|
OneToOne | |
| cow (Bos Taurus) |
Mammalia | DHX16 34 33 |
|
OneToOne | |
| dog (Canis familiaris) |
Mammalia | DHX16 34 33 |
|
OneToOne | |
| mouse (Mus musculus) |
Mammalia | Dhx16 16 34 33 |
|
||
| rat (Rattus norvegicus) |
Mammalia | Dhx16 33 |
|
||
| lizard (Anolis carolinensis) |
Reptilia | DHX16 34 |
|
OneToOne | |
| tropical clawed frog (Silurana tropicalis) |
Amphibia | Str.18519 33 |
|
||
| African clawed frog (Xenopus laevis) |
Amphibia | Xl.3751 33 |
|
||
| zebrafish (Danio rerio) |
Actinopterygii | dhx16 34 33 |
|
OneToOne | |
| wufa91b12 33 |
|
||||
| fruit fly (Drosophila melanogaster) |
Insecta | l(2)37Cb 34 33 |
|
OneToOne | |
| African malaria mosquito (Anopheles gambiae) |
Insecta | AgaP_AGAP009093 33 |
|
||
| worm (Caenorhabditis elegans) |
Secernentea | mog-4 34 33 |
|
OneToOne | |
| baker's yeast (Saccharomyces cerevisiae) |
Saccharomycetes | PRP43 34 |
|
OneToMany | |
| PRP2 36 |
|
|
|||
| thale cress (Arabidopsis thaliana) |
eudicotyledons | ESP3 33 |
|
||
| Alicante grape (Vitis vinifera) |
eudicotyledons | Vvi.9177 33 |
|
||
| rice (Oryza sativa) |
Liliopsida | Os05g0389800 33 |
|
||
| wheat (Triticum aestivum) |
Liliopsida | Ta.25604 33 |
|
||
| sea squirt (Ciona savignyi) |
Ascidiacea | -- 34 |
|
OneToOne | |
| Cin.3838 33 |
|
||||
| fission yeast (Schizosaccharomyces pombe) |
Schizosaccharomycetes | cdc28 33 |
|
||
| bread mold (Neurospora crassa) |
Ascomycetes | NCU08928 33 |
|
||
| sea squirt (Ciona intestinalis) |
Ascidiacea | Cin.3838 33 |
|
- Species where no ortholog for DHX16 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- chicken (Gallus gallus)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- platypus (Ornithorhynchus anatinus)
- rainbow trout (Oncorhynchus mykiss)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
Evolution for DHX16 Gene
- ENSEMBL:
- Gene Tree for DHX16 (if available)
- TreeFam:
- Gene Tree for DHX16 (if available)
- Aminode:
- Evolutionary constrained regions (ECRs) for DHX16: view image
Paralogs for DHX16 Gene
(10) SIMAP similar genes for DHX16 Gene using alignment to 5 proteins:
- DHX16_HUMAN
- A2AB15_HUMAN
- Q5SQH4_HUMAN
- Q5SQH5_HUMAN
- Q6PKC8_HUMAN
Variants for DHX16 Gene
| SNP ID | Clin | Chr 06 pos | Variation | AA Info | Type |
|---|---|---|---|---|---|
| rs1000218515 | -- | 30,673,554(-) | C/A | upstream_transcript_variant | |
| rs1000255443 | -- | 30,655,501(-) | G/A | coding_sequence_variant, non_coding_transcript_variant, synonymous_variant | |
| rs1000266637 | -- | 30,666,601(-) | A/G | genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant | |
| rs1000340780 | -- | 30,666,916(-) | T/A | genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant | |
| rs1000462425 | -- | 30,659,085(-) | C/T | intron_variant |
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| esv2670269 | CNV | deletion | 23128226 |
| esv2731791 | CNV | deletion | 23290073 |
| esv3411275 | CNV | duplication | 20981092 |
| nsv1074389 | CNV | deletion | 25765185 |
| nsv1122126 | CNV | deletion | 24896259 |
| nsv1144137 | CNV | deletion | 24896259 |
| nsv601264 | CNV | loss | 21841781 |
| nsv601481 | CNV | loss | 21841781 |
| nsv823472 | CNV | gain | 20364138 |
| nsv830626 | CNV | loss | 17160897 |
Residual Variation Intolerance Score:
18.1% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score:
4.60;
65.29% of all genes are more intolerant (likely to be disease-causing)
Additional Variant Information for DHX16 Gene
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for DHX16 Gene
Disorders for DHX16 Gene
Additional Disease Information for DHX16
- Genetic Association Database
- (GAD)
- Human Genome Epidemiology Navigator
- (HuGE)
- ATLAS of Genetics and Cytogenetics in Oncology and Haematology
No disorders were found for DHX16 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for DHX16 Gene
Publications for DHX16 Gene
- Cloning and characterization of a human DEAH-box RNA helicase, a functional homolog of fission yeast Cdc28/Prp8. (PMID: 9547260) Imamura O … Furuichi Y (Nucleic acids research 1998) 2 3 4 22 58
- Contribution of DEAH-box protein DHX16 in human pre-mRNA splicing. (PMID: 20423332) Gencheva M … Lin RJ (The Biochemical journal 2010) 2 3 4 58
- GPKOW is essential for pre-mRNA splicing in vitro and suppresses splicing defect caused by dominant-negative DHX16 mutation in vivo. (PMID: 25296192) Zang S … Lin RJ (Bioscience reports 2014) 3 4 58
- A Large-scale genetic association study of esophageal adenocarcinoma risk. (PMID: 20453000) Liu CY … Christiani DC (Carcinogenesis 2010) 3 44 58
- Nuclear retention of unspliced pre-mRNAs by mutant DHX16/hPRP2, a spliceosomal DEAH-box protein. (PMID: 20841358) Gencheva M … Lin RJ (The Journal of biological chemistry 2010) 3 4 58
Products for DHX16 Gene
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- Quality Products:
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Sources for DHX16 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) ASD
- (29) ECgene
- (30) GeneAnnot
- (31) CGAP SAGE
- (32) SOURCE
- (33) HomoloGene
- (34) PanEnsembl
- (35) euGenes
- (36) SGD
- (37) FlyBase
- (38) WormBase
- (39) Pseudogene
- (40) DGV
- (41) dbSNP
- (42) GenAtlas
- (43) HGMD
- (44) GAD
- (45) BGMUT
- (46) HuGE
- (47) Atlas
- (48) Cell Signaling Technology
- (49) GenBank
- (50) H-invDB
- (51) HORDE
- (52) HUGE
- (53) IMGT
- (54) Leiden
- (55) miRBase
- (56) DME
- (57) OriGene
- (58) PubMed
- (59) R&D Systems
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