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Aliases for DGCR9 Gene

Subcategory (RNA class) for DGCR9 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for DGCR9 Gene

  • DiGeorge Syndrome Critical Region Gene 9 (Non-Protein Coding) 2 3 5
  • DiGeorge Syndrome Critical Region Gene 9 2
  • DiGeorge Syndrome Gene A 3
  • DGS-A 3

External Ids for DGCR9 Gene

Previous GeneCards Identifiers for DGCR9 Gene

  • GC22P015946
  • GC22P017379
  • GC22U900087
  • GC22P019005
  • GC22P002626
  • GC22P019042
  • GC22P019050
  • GC22P019069
  • GC22P019090
  • GC22P019168
  • GC22P019184
  • GC22P019200

Summaries for DGCR9 Gene

GeneCards Summary for DGCR9 Gene

DGCR9 (DiGeorge Syndrome Critical Region Gene 9 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for DGCR9 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DGCR9 Gene

Genomics for DGCR9 Gene

GeneHancer (GH) Regulatory Elements for DGCR9 Gene

Promoters and enhancers for DGCR9 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22I018910 Enhancer 0.4 dbSUPER 4.9 -109.0 -108979 0.2 CTCF RAD21 ZBTB17 DGCR6 DGCR9 ENSG00000283809 GC22P018961
GH22I018916 Enhancer 0.2 dbSUPER 4.6 -98.8 -98806 5.2 DGCR6 PRODH DGCR5 DGCR9 GC22P018961 ENSG00000283809
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around DGCR9 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the DGCR9 gene promoter:

Genomic Locations for DGCR9 Gene

Genomic Locations for DGCR9 Gene
chr22:19,017,834-19,020,248
(GRCh38/hg38)
Size:
2,415 bases
Orientation:
Plus strand
chr22:19,005,347-19,007,761
(GRCh37/hg19)

Genomic View for DGCR9 Gene

Genes around DGCR9 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
DGCR9 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DGCR9 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DGCR9 Gene

Proteins for DGCR9 Gene

Post-translational modifications for DGCR9 Gene

No Post-translational modifications

No data available for DME Specific Peptides for DGCR9 Gene

Domains & Families for DGCR9 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for DGCR9 Gene

Function for DGCR9 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for DGCR9 Gene

Localization for DGCR9 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for DGCR9 Gene

Pathways & Interactions for DGCR9 Gene

SuperPathways for DGCR9 Gene

No Data Available

Interacting Proteins for DGCR9 Gene

Gene Ontology (GO) - Biological Process for DGCR9 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for DGCR9 Gene

Drugs & Compounds for DGCR9 Gene

No Compound Related Data Available

Transcripts for DGCR9 Gene

mRNA/cDNA for DGCR9 Gene

(3) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for DGCR9 Gene

DiGeorge syndrome critical region gene 9:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for DGCR9 Gene

No ASD Table

Relevant External Links for DGCR9 Gene

GeneLoc Exon Structure for
DGCR9
ECgene alternative splicing isoforms for
DGCR9

Expression for DGCR9 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for DGCR9 Gene

NURSA nuclear receptor signaling pathways regulating expression of DGCR9 Gene:

DGCR9

SOURCE GeneReport for Unigene cluster for DGCR9 Gene:

Hs.106311
genes like me logo Genes that share expression patterns with DGCR9: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for DGCR9 Gene

Orthologs for DGCR9 Gene

Evolution for DGCR9 Gene

ENSEMBL:
Gene Tree for DGCR9 (if available)
TreeFam:
Gene Tree for DGCR9 (if available)

No data available for Orthologs for DGCR9 Gene

Paralogs for DGCR9 Gene

No data available for Paralogs for DGCR9 Gene

Variants for DGCR9 Gene

Sequence variations from dbSNP and Humsavar for DGCR9 Gene

SNP ID Clin Chr 22 pos Variation AA Info Type
rs1000261155 -- 19,019,685(+) T/C non_coding_transcript_variant
rs1000970667 -- 19,016,387(+) C/T upstream_transcript_variant
rs1001044323 -- 19,016,279(+) G/A upstream_transcript_variant
rs1002162742 -- 19,017,085(+) A/T upstream_transcript_variant
rs1002671979 -- 19,017,330(+) T/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for DGCR9 Gene

Variant ID Type Subtype PubMed ID
nsv966074 CNV duplication 23825009
nsv588213 CNV gain 21841781
nsv588203 CNV gain+loss 21841781
nsv588155 CNV gain 21841781
nsv516997 CNV gain+loss 19592680
nsv471180 CNV loss 18288195
nsv471179 CNV gain 18288195
nsv442503 CNV gain 18776908
nsv1160726 CNV duplication 26073780
nsv1067175 CNV loss 25217958
nsv1065578 CNV gain 25217958
esv3893432 CNV gain 25118596
esv3893431 CNV gain+loss 25118596
esv3647254 CNV loss 21293372
esv3584491 CNV gain 24956385
esv3584483 CNV gain 24956385
esv3575418 CNV gain 25503493
esv32687 CNV gain+loss 17666407
esv2758824 CNV gain+loss 17122850
esv2751935 CNV loss 17911159
esv2658270 CNV deletion 23128226
esv23076 CNV gain+loss 19812545
dgv99e203 CNV gain+loss 21179565
dgv7978n54 CNV loss 21841781
dgv7977n54 CNV gain 21841781
dgv7975n54 CNV loss 21841781
dgv7973n54 CNV gain 21841781
dgv7972n54 CNV gain+loss 21841781
dgv7969n54 CNV gain 21841781
dgv543n27 CNV gain 19166990
dgv542n27 CNV loss 19166990
dgv4477n100 CNV gain 25217958
dgv4476n100 CNV gain 25217958
dgv4474n100 CNV gain 25217958
dgv4473n100 CNV gain+loss 25217958
dgv4472n100 CNV loss 25217958
dgv4469n100 CNV gain 25217958
dgv4468n100 CNV gain+loss 25217958
dgv4467n100 CNV gain 25217958
dgv4466n100 CNV gain+loss 25217958
dgv43e213 CNV gain 24956385
dgv42e213 CNV gain 24956385
dgv174e55 CNV gain 17911159
dgv173e55 CNV gain 17911159
dgv169n111 CNV duplication 26073780
dgv1285e212 CNV loss 25503493
dgv1284e212 CNV gain 25503493

Additional Variant Information for DGCR9 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
DGCR9

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for DGCR9 Gene

Disorders for DGCR9 Gene

Additional Disease Information for DGCR9

No disorders were found for DGCR9 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for DGCR9 Gene

Publications for DGCR9 Gene

  1. A transcription map of the DiGeorge and velo-cardio-facial syndrome minimal critical region on 22q11. (PMID: 8776594) Gong W … Budarf ML (Human molecular genetics 1996) 2 3 58

Products for DGCR9 Gene

Sources for DGCR9 Gene

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