Aliases for DGCR11 Gene

Data sources for DGCR11 Gene:

Subcategory (RNA class) for DGCR11 Gene

lncRNA

Aliases for DGCR11 Gene

External Ids for DGCR11 Gene

Previous GeneCards Identifiers for DGCR11 Gene

  • GC22U900002
  • GC22M019033
  • GC22M002654

Summaries for DGCR11 Gene

GeneCards Summary for DGCR11 Gene

DGCR11 (DiGeorge Syndrome Critical Region Gene 11) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with DGCR11 include Digeorge Syndrome and T-Cell Immunodeficiency With Thymic Aplasia.

Additional gene information for DGCR11 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for DGCR11 Gene

Genomics for DGCR11 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for DGCR11 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around DGCR11 on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the DGCR11 gene promoter:
  • AML1a
  • CREB
  • Elk-1
  • FOXF2
  • HEN1
  • Lmo2
  • Nkx2-5
  • SREBP-1a
  • SREBP-1b
  • SREBP-1c

Genomic Locations for DGCR11 Gene

Latest Assembly
chr22:19,046,161-19,048,375
(GRCh38/hg38)
Size:
2,215 bases
Orientation:
Minus strand

Previous Assembly
chr22:19,033,675-19,035,888
(GRCh37/hg19 by Entrez Gene)
Size:
2,214 bases
Orientation:
Minus strand

chr22:19,033,675-19,035,888
(GRCh37/hg19 by Ensembl)
Size:
2,214 bases
Orientation:
Minus strand

Genomic View for DGCR11 Gene

Genes around DGCR11 on UCSC Golden Path with GeneCards custom track
DGCR11 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
DGCR11 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DGCR11 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DGCR11 Gene

Proteins for DGCR11 Gene

Post-translational modifications for DGCR11 Gene

No Post-translational modifications

No data available for DME Specific Peptides for DGCR11 Gene

Domains & Families for DGCR11 Gene

Gene Families for DGCR11 Gene

genes like me logo Genes that share domains with DGCR11: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for DGCR11 Gene

Function for DGCR11 Gene

Phenotypes From GWAS Catalog for DGCR11 Gene

CRISPR products for research

miRNA for DGCR11 Gene

miRTarBase miRNAs that target DGCR11

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for DGCR11 Gene

Localization for DGCR11 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for DGCR11 Gene

Pathways & Interactions for DGCR11 Gene

PathCards logo

SuperPathways for DGCR11 Gene

No Data Available

Gene Ontology (GO) - Biological Process for DGCR11 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for DGCR11 Gene

Drugs & Compounds for DGCR11 Gene

No Compound Related Data Available

Transcripts for DGCR11 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for DGCR11 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00001458B9_9606 lncRNA 2215 4

RefSeq: NR_024157,

Ensembl: ENST00000609958 (view in UCSC) ,

LNCipedia: DGCR11:3,

NONCODE: NONHSAT083379.2,

URS0000E9E9F7_9606 lncRNA 2215 1

LncBook: HSALNT0289494,

URS0001BF5516_9606 lncRNA 2214 1

LncBook: HSALNT0289494,

DGCR11 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for DGCR11 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for DGCR11 Gene

No ASD Table

Relevant External Links for DGCR11 Gene

GeneLoc Exon Structure for
DGCR11

Expression for DGCR11 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for DGCR11 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for DGCR11

SOURCE GeneReport for Unigene cluster for DGCR11 Gene:

Hs.720269
genes like me logo Genes that share expression patterns with DGCR11: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for DGCR11 Gene

Orthologs for DGCR11 Gene

Evolution for DGCR11 Gene

ENSEMBL:
Gene Tree for DGCR11 (if available)
TreeFam:
Gene Tree for DGCR11 (if available)

No data available for Orthologs for DGCR11 Gene

Paralogs for DGCR11 Gene

No data available for Paralogs for DGCR11 Gene

Variants for DGCR11 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for DGCR11 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for DGCR11 Gene

Variant ID Type Subtype PubMed ID
dgv173e55 CNV gain 17911159
dgv174e55 CNV gain 17911159
dgv4473n100 CNV gain+loss 25217958
dgv4474n100 CNV gain 25217958
dgv7973n54 CNV gain 21841781
dgv824e214 CNV gain 21293372
esv2758824 CNV gain+loss 17122850
esv3575418 CNV gain 25503493
nsv1067175 CNV loss 25217958
nsv588213 CNV gain 21841781

Additional Variant Information for DGCR11 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
DGCR11

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for DGCR11 Gene

Disorders for DGCR11 Gene

MalaCards: The human disease database

(2) MalaCards diseases for DGCR11 Gene - From: COP and GCD

Disorder Aliases PubMed IDs
digeorge syndrome
  • dgs
t-cell immunodeficiency with thymic aplasia
  • tidta
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for DGCR11

genes like me logo Genes that share disorders with DGCR11: view

No data available for UniProtKB/Swiss-Prot and Genatlas for DGCR11 Gene

Publications for DGCR11 Gene

  1. A transcription map of the DiGeorge and velo-cardio-facial syndrome minimal critical region on 22q11. (PMID: 8776594) Gong W … Budarf ML (Human molecular genetics 1996) 2 3

Products for DGCR11 Gene

Sources for DGCR11 Gene