Free for academic non-profit institutions. Other users need a Commercial license

Aliases for DGCR11 Gene

Subcategory (RNA class) for DGCR11 Gene

lncRNA

Quality Score for this RNA gene is

13

Aliases for DGCR11 Gene

  • DiGeorge Syndrome Critical Region Gene 11 (Non-Protein Coding) 2 3 5
  • DiGeorge Syndrome Critical Region Gene 11 2
  • DiGeorge Syndrome Gene D 3
  • DGS-D 3

External Ids for DGCR11 Gene

ORGUL Members for DGCR11 Gene

Previous GeneCards Identifiers for DGCR11 Gene

  • GC22U900002
  • GC22M002654

Summaries for DGCR11 Gene

GeneCards Summary for DGCR11 Gene

DGCR11 (DiGeorge Syndrome Critical Region Gene 11 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for DGCR11 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DGCR11 Gene

Genomics for DGCR11 Gene

GeneHancer (GH) Regulatory Elements for DGCR11 Gene

Promoters and enhancers for DGCR11 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22I019477 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 41.2 -430.9 -430875 3.8 HDGF HNRNPUL1 PKNOX1 CLOCK SMAD1 FOXA2 ARNT ARID4B SIN3A YBX1 UFD1 CDC45 DGCR8 TRMT2A RPL7AP70 DGCR11 ENSG00000273300 RPL8P5 LINC01311 RANBP1
GH22I019119 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 23.4 -73.2 -73223 3.4 HDGF PKNOX1 SMAD1 ARNT ARID4B SIN3A YY1 POLR2B ZNF766 CBX5 DGCR2 ENSG00000223461 DGCR11 TRMT2A
GH22I019947 Promoter/Enhancer 2.2 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 22.5 -902.3 -902349 7.3 HDGF PKNOX1 FOXA2 MLX ZFP64 ARID4B FEZF1 DMAP1 ZNF2 POLR2B COMT DGCR8 TRMT2A ENSG00000273300 RPL8P5 LOC100420177 LINC01311 MED15 DGCR11 RPL7AP70
GH22I019107 Enhancer 1.5 Ensembl ENCODE dbSUPER 29.6 -62.0 -62018 4.9 HDGF HNRNPUL1 PKNOX1 CLOCK SMAD1 FOXA2 MLX ARNT ARID4B FEZF1 DGCR2 DGCR11 ESS2 UFD1 RPL7AP70 DGCR8 E2F6P1 GSC2 TBX1 PIR39211
GH22I019418 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 21.8 -372.7 -372729 6.2 HDGF HNRNPUL1 PKNOX1 SMAD1 ARNT IRF4 YY1 POLR2B ZNF766 E2F8 UFD1 TRMT2A DGCR8 RPL7AP70 DGCR11 RPL8P5 ENSG00000273300 LINC01311 RANBP1 ESS2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around DGCR11 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the DGCR11 gene promoter:

Genomic Locations for DGCR11 Gene

Genomic Locations for DGCR11 Gene
chr22:19,046,162-19,048,375
(GRCh38/hg38)
Size:
2,214 bases
Orientation:
Minus strand
chr22:19,033,675-19,035,888
(GRCh37/hg19)

Genomic View for DGCR11 Gene

Genes around DGCR11 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
DGCR11 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DGCR11 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DGCR11 Gene

Proteins for DGCR11 Gene

Post-translational modifications for DGCR11 Gene

No Post-translational modifications

No data available for DME Specific Peptides for DGCR11 Gene

Domains & Families for DGCR11 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for DGCR11 Gene

Function for DGCR11 Gene

Phenotypes From GWAS Catalog for DGCR11 Gene

Animal Model Products

miRNA for DGCR11 Gene

miRTarBase miRNAs that target DGCR11

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for DGCR11 Gene

Localization for DGCR11 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for DGCR11 Gene

Pathways & Interactions for DGCR11 Gene

SuperPathways for DGCR11 Gene

No Data Available

Interacting Proteins for DGCR11 Gene

Gene Ontology (GO) - Biological Process for DGCR11 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for DGCR11 Gene

Drugs & Compounds for DGCR11 Gene

No Compound Related Data Available

Transcripts for DGCR11 Gene

mRNA/cDNA for DGCR11 Gene

(4) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for DGCR11 Gene

DiGeorge syndrome critical region gene 11 (non-protein coding):
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for DGCR11 Gene

No ASD Table

Relevant External Links for DGCR11 Gene

GeneLoc Exon Structure for
DGCR11
ECgene alternative splicing isoforms for
DGCR11

Expression for DGCR11 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for DGCR11 Gene

NURSA nuclear receptor signaling pathways regulating expression of DGCR11 Gene:

DGCR11

SOURCE GeneReport for Unigene cluster for DGCR11 Gene:

Hs.720269
genes like me logo Genes that share expression patterns with DGCR11: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for DGCR11 Gene

Orthologs for DGCR11 Gene

Evolution for DGCR11 Gene

ENSEMBL:
Gene Tree for DGCR11 (if available)
TreeFam:
Gene Tree for DGCR11 (if available)

No data available for Orthologs for DGCR11 Gene

Paralogs for DGCR11 Gene

No data available for Paralogs for DGCR11 Gene

Variants for DGCR11 Gene

Sequence variations from dbSNP and Humsavar for DGCR11 Gene

SNP ID Clin Chr 22 pos Variation AA Info Type
rs1000057929 -- 19,047,835(-) C/A non_coding_transcript_variant
rs1000710303 -- 19,046,186(-) T/C non_coding_transcript_variant
rs1002944370 -- 19,046,020(-) G/A downstream_transcript_variant
rs1003481913 -- 19,048,355(-) C/T non_coding_transcript_variant
rs1003513156 -- 19,048,056(-) G/A non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for DGCR11 Gene

Variant ID Type Subtype PubMed ID
nsv588213 CNV gain 21841781
nsv1067175 CNV loss 25217958
esv3575418 CNV gain 25503493
esv2758824 CNV gain+loss 17122850
dgv824e214 CNV gain 21293372
dgv7973n54 CNV gain 21841781
dgv4474n100 CNV gain 25217958
dgv4473n100 CNV gain+loss 25217958
dgv174e55 CNV gain 17911159
dgv173e55 CNV gain 17911159

Additional Variant Information for DGCR11 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
DGCR11

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for DGCR11 Gene

Disorders for DGCR11 Gene

Additional Disease Information for DGCR11

No disorders were found for DGCR11 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for DGCR11 Gene

Publications for DGCR11 Gene

  1. A transcription map of the DiGeorge and velo-cardio-facial syndrome minimal critical region on 22q11. (PMID: 8776594) Gong W … Budarf ML (Human molecular genetics 1996) 2 3 58

Products for DGCR11 Gene

Sources for DGCR11 Gene

Content
Loading form....