Aliases for DEPDC1-AS1 Gene

Subcategory (RNA class) for DEPDC1-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for DEPDC1-AS1 Gene

  • DEPDC1 Antisense RNA 1 2 3 5
  • DEPDC1-AS1 2 168
  • HSALNG0004322 167
  • NONHSAG001774 92

External Ids for DEPDC1-AS1 Gene

Summaries for DEPDC1-AS1 Gene

GeneCards Summary for DEPDC1-AS1 Gene

DEPDC1-AS1 (DEPDC1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for DEPDC1-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for DEPDC1-AS1 Gene

Genomics for DEPDC1-AS1 Gene

GeneHancer (GH) Regulatory Elements for DEPDC1-AS1 Gene

Promoters and enhancers for DEPDC1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J068495 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 500.7 -0.1 -60 2.8 SIN3A NRF1 USF1 POLR2G SP1 FOS ZFX POLR2A CLOCK ZBTB26 DEPDC1 DEPDC1-AS1 lnc-RPE65-1
GH01J068551 Enhancer 0.4 Ensembl 0.2 +54.7 54725 1.2 FOS GATA2 JUN JUND piR-32810-002 RPE65 DEPDC1-AS1 piR-32325-003
GH01J068542 Enhancer 0.4 Ensembl 0.3 +46.1 46125 0.4 FOS POLR2A JUND piR-32810-002 TXNP2 DEPDC1-AS1
GH01J068527 Enhancer 0.3 ENCODE 0.3 +31.8 31812 1.4 FOS RPE65 TXNP2 piR-32810-002 DEPDC1-AS1
GH01J068516 Enhancer 0.2 Ensembl 0.4 +19.7 19725 0.4 lnc-DEPDC1-3 TXNP2 ENSG00000233589 DEPDC1-AS1 piR-32810-002
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around DEPDC1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for DEPDC1-AS1 Gene

Genomic Locations for DEPDC1-AS1 Gene
chr1:68,496,676-68,574,547
(GRCh38/hg38)
Size:
77,872 bases
Orientation:
Plus strand
chr1:68,962,359-69,004,310
(GRCh37/hg19)
Size:
41,952 bases
Orientation:
Plus strand

Genomic View for DEPDC1-AS1 Gene

Genes around DEPDC1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
DEPDC1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DEPDC1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DEPDC1-AS1 Gene

Proteins for DEPDC1-AS1 Gene

Post-translational modifications for DEPDC1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for DEPDC1-AS1 Gene

Domains & Families for DEPDC1-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for DEPDC1-AS1 Gene

Function for DEPDC1-AS1 Gene

Phenotypes From GWAS Catalog for DEPDC1-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for DEPDC1-AS1 Gene

Localization for DEPDC1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for DEPDC1-AS1 Gene

Pathways & Interactions for DEPDC1-AS1 Gene

PathCards logo

SuperPathways for DEPDC1-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for DEPDC1-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for DEPDC1-AS1 Gene

Drugs & Compounds for DEPDC1-AS1 Gene

No Compound Related Data Available

Transcripts for DEPDC1-AS1 Gene

mRNA/cDNA for DEPDC1-AS1 Gene

4 RNACentral transcripts :
1 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 NONCODE transcripts :
3 LncBook transcripts :
3 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for DEPDC1-AS1 Gene

No ASD Table

Relevant External Links for DEPDC1-AS1 Gene

GeneLoc Exon Structure for
DEPDC1-AS1

Expression for DEPDC1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for DEPDC1-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for DEPDC1-AS1

genes like me logo Genes that share expression patterns with DEPDC1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for DEPDC1-AS1 Gene

Orthologs for DEPDC1-AS1 Gene

Evolution for DEPDC1-AS1 Gene

ENSEMBL:
Gene Tree for DEPDC1-AS1 (if available)
TreeFam:
Gene Tree for DEPDC1-AS1 (if available)

No data available for Orthologs for DEPDC1-AS1 Gene

Paralogs for DEPDC1-AS1 Gene

No data available for Paralogs for DEPDC1-AS1 Gene

Variants for DEPDC1-AS1 Gene

Additional dbSNP identifiers (rs#s) for DEPDC1-AS1 Gene

Additional Variant Information for DEPDC1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
DEPDC1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for DEPDC1-AS1 Gene

Disorders for DEPDC1-AS1 Gene

Additional Disease Information for DEPDC1-AS1

No disorders were found for DEPDC1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for DEPDC1-AS1 Gene

Publications for DEPDC1-AS1 Gene

No publications were found for DEPDC1-AS1 Gene.

Products for DEPDC1-AS1 Gene

Sources for DEPDC1-AS1 Gene