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Aliases for DENND6A-DT Gene

Subcategory (RNA class) for DENND6A-DT Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for DENND6A-DT Gene

  • DENND6A Divergent Transcript 2 3 5

External Ids for DENND6A-DT Gene

Summaries for DENND6A-DT Gene

GeneCards Summary for DENND6A-DT Gene

DENND6A-DT (DENND6A Divergent Transcript) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for DENND6A-DT Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DENND6A-DT Gene

Genomics for DENND6A-DT Gene

GeneHancer (GH) Regulatory Elements for DENND6A-DT Gene

Promoters and enhancers for DENND6A-DT Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J057690 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 650.7 -0.5 -522 3.8 HDGF PKNOX1 ARID4B SIN3A DMAP1 YY1 ZNF213 ZNF207 ZNF143 FOS DENND6A DENND6A-DT ARF4 FLNB-AS1 IL17RD ACOX2 SLMAP DENND6A-AS1
GH03J057594 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 10.7 -95.5 -95497 6 DMAP1 YY1 ZNF213 E2F8 ZNF143 SP3 NFYC MEF2D GLIS1 NBN ARF4 ARF4-AS1 GC03P057599 DENND6A FAM208A DENND6A-AS1 PDE12 DENND6A-DT APPL1 HESX1
GH03J057555 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 10.2 -136.3 -136308 3.4 CLOCK MLX DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 PDE12 GC03M057554 DENND6A APPL1 CCDC66 FAM208A FLNB-AS1 FLNB DENND6A-DT HESX1
GH03J057754 Promoter/Enhancer 1.8 Ensembl ENCODE dbSUPER 11.5 +64.0 63982 4.3 HDGF MLX ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 IRF4 YY1 SLMAP DENND6A DENND6A-DT IL17RD PDE12 DNAH12 ARF4 ENSG00000272202 GC03P057753 PDHA1P1
GH03J057169 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE 9.5 -522.9 -522867 0.8 ELF3 PKNOX1 RB1 ARID4B MZF1 ZNF2 ZNF48 RAD21 ZEB1 ZNF335 IL17RD APPL1 HESX1 PDE12 ASB14 DNAH12 DENND6A DENND6A-DT SLMAP LOC105377101
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around DENND6A-DT on UCSC Golden Path with GeneCards custom track

Genomic Locations for DENND6A-DT Gene

Genomic Locations for DENND6A-DT Gene
chr3:57,693,068-57,696,651
(GRCh38/hg38)
Size:
3,584 bases
Orientation:
Plus strand
chr3:57,678,932-57,682,323
(GRCh37/hg19)

Genomic View for DENND6A-DT Gene

Genes around DENND6A-DT on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
DENND6A-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DENND6A-DT Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DENND6A-DT Gene

Proteins for DENND6A-DT Gene

Post-translational modifications for DENND6A-DT Gene

No Post-translational modifications

No data available for DME Specific Peptides for DENND6A-DT Gene

Domains & Families for DENND6A-DT Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for DENND6A-DT Gene

Function for DENND6A-DT Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for DENND6A-DT Gene

Localization for DENND6A-DT Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for DENND6A-DT Gene

Pathways & Interactions for DENND6A-DT Gene

SuperPathways for DENND6A-DT Gene

No Data Available

Interacting Proteins for DENND6A-DT Gene

Gene Ontology (GO) - Biological Process for DENND6A-DT Gene

None

No data available for Pathways by source and SIGNOR curated interactions for DENND6A-DT Gene

Drugs & Compounds for DENND6A-DT Gene

No Compound Related Data Available

Transcripts for DENND6A-DT Gene

mRNA/cDNA for DENND6A-DT Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for DENND6A-DT Gene

No ASD Table

Relevant External Links for DENND6A-DT Gene

GeneLoc Exon Structure for
DENND6A-DT
ECgene alternative splicing isoforms for
DENND6A-DT

Expression for DENND6A-DT Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for DENND6A-DT Gene

Orthologs for DENND6A-DT Gene

Evolution for DENND6A-DT Gene

ENSEMBL:
Gene Tree for DENND6A-DT (if available)
TreeFam:
Gene Tree for DENND6A-DT (if available)

No data available for Orthologs for DENND6A-DT Gene

Paralogs for DENND6A-DT Gene

No data available for Paralogs for DENND6A-DT Gene

Variants for DENND6A-DT Gene

Sequence variations from dbSNP and Humsavar for DENND6A-DT Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1000391896 -- 57,693,680(+) T/C intron_variant
rs1000847408 -- 57,693,887(+) G/C non_coding_transcript_variant
rs1001509367 -- 57,693,165(+) C/T upstream_transcript_variant
rs1001561598 -- 57,693,386(+) C/T intron_variant
rs1001670485 -- 57,691,937(+) A/G upstream_transcript_variant

Additional Variant Information for DENND6A-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
DENND6A-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for DENND6A-DT Gene

Disorders for DENND6A-DT Gene

Additional Disease Information for DENND6A-DT

No disorders were found for DENND6A-DT Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for DENND6A-DT Gene

Publications for DENND6A-DT Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for DENND6A-DT Gene

Sources for DENND6A-DT Gene

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