Aliases for DENND5B-AS1 Gene

Data sources for DENND5B-AS1 Gene:

Subcategory (RNA class) for DENND5B-AS1 Gene

lncRNA

Aliases for DENND5B-AS1 Gene

External Ids for DENND5B-AS1 Gene

Previous GeneCards Identifiers for DENND5B-AS1 Gene

  • GC00U933706
  • GC12P031743

Summaries for DENND5B-AS1 Gene

GeneCards Summary for DENND5B-AS1 Gene

DENND5B-AS1 (DENND5B Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for DENND5B-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for DENND5B-AS1 Gene

Genomics for DENND5B-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for DENND5B-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J031587 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas 250.4 +8.8 8808 4.8 CHD2 ZBTB10 MXD4 FEZF1 FOXA1 ZNF217 BHLHE40 ZIC2 HOMEZ KDM6A DENND5B MN297144 DENND5B-AS1 DDX11 IPO8 SINHCAF AK4P3 DDX11-AS1 HSALNG0090208
GH12J031582 Enhancer 0.3 Ensembl 250.7 +0.7 687 0.6 CEBPB DENND5B-AS1 SINHCAF DENND5B MN297144 HSALNG0090208
GH12J031316 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 9.8 -259.4 -259359 10.8 TBP ZBTB10 BCL11A MNT IKZF1 SMAD5 IRF2 MBD2 POLR2A ZEB1 SINHCAF DDX11 IPO8 FLJ13224 RESF1 ENSG00000256984 DENND5B-AS1 DENND5B RNU5F-4P lnc-DENND5B-3
GH12J031368 Promoter/Enhancer 1.8 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 10.7 -211.1 -211079 3.7 FOXA1 IKZF1 BHLHE40 ZNF511 FOXA2 VEZF1 KLF7 ETV4 RARA TEAD3 LINC02387 DENND5B DENND5B-AS1 RNU5F-4P SINHCAF AK4P3 DDX11 ETFBKMT HSALNG0090199 lnc-SINHCAF-3
GH12J031649 Promoter/Enhancer 1.6 EPDnew Ensembl ENCODE 10.4 +70.6 70557 4.2 MNT DEK IKZF1 IRF2 HES1 CTCF BHLHE40 CEBPB ARNT REST DENND5B ENSG00000287388 RNU5F-4P DENND5B-AS1 AK4P3 ETFBKMT AMN1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around DENND5B-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for DENND5B-AS1 Gene

Latest Assembly
chr12:31,581,414-31,642,511
(GRCh38/hg38)
Size:
61,098 bases
Orientation:
Plus strand

Previous Assembly
chr12:31,742,857-31,768,285
(GRCh37/hg19 by Entrez Gene)
Size:
25,429 bases
Orientation:
Plus strand

chr12:31,742,857-31,768,600
(GRCh37/hg19 by Ensembl)
Size:
25,744 bases
Orientation:
Plus strand

Genomic View for DENND5B-AS1 Gene

Genes around DENND5B-AS1 on UCSC Golden Path with GeneCards custom track
DENND5B-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
DENND5B-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DENND5B-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DENND5B-AS1 Gene

Proteins for DENND5B-AS1 Gene

Post-translational modifications for DENND5B-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for DENND5B-AS1 Gene

Domains & Families for DENND5B-AS1 Gene

Gene Families for DENND5B-AS1 Gene

genes like me logo Genes that share domains with DENND5B-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for DENND5B-AS1 Gene

Function for DENND5B-AS1 Gene

Phenotypes From GWAS Catalog for DENND5B-AS1 Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for DENND5B-AS1 Gene

Localization for DENND5B-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for DENND5B-AS1 Gene

Pathways & Interactions for DENND5B-AS1 Gene

PathCards logo

SuperPathways for DENND5B-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for DENND5B-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for DENND5B-AS1 Gene

Drugs & Compounds for DENND5B-AS1 Gene

No Compound Related Data Available

Transcripts for DENND5B-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for DENND5B-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00004C0EF1_9606 lncRNA 564 5

RefSeq: NR_046909,

Ensembl: ENST00000536397 (view in UCSC) ,

LncBook: HSALNT0187431,

LNCipedia: DENND5B-AS1:1,

NONCODE: NONHSAT027558.2,

URS00000D5C7D_9606 lncRNA 1109 4

Ensembl: ENST00000537346 (view in UCSC) ,

LncBook: HSALNT0187432,

LNCipedia: DENND5B-AS1:2,

NONCODE: NONHSAT027559.2,

URS00008BE89B_9606 lncRNA 1326 2

LNCipedia: DENND5B-AS1:6,

NONCODE: NONHSAT027566.2,

URS0000D5A123_9606 lncRNA 402 2

LncBook: HSALNT0187430,

LNCipedia: DENND5B-AS1:3,

URS0001BD1881_9606 lncRNA 9388 1

LncBook: HSALNT0187423,

DENND5B-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for DENND5B-AS1 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for DENND5B-AS1 Gene

No ASD Table

Relevant External Links for DENND5B-AS1 Gene

GeneLoc Exon Structure for
DENND5B-AS1

Expression for DENND5B-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for DENND5B-AS1 Gene

SOURCE GeneReport for Unigene cluster for DENND5B-AS1 Gene:

Hs.627628
genes like me logo Genes that share expression patterns with DENND5B-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for DENND5B-AS1 Gene

Orthologs for DENND5B-AS1 Gene

Evolution for DENND5B-AS1 Gene

ENSEMBL:
Gene Tree for DENND5B-AS1 (if available)
TreeFam:
Gene Tree for DENND5B-AS1 (if available)

No data available for Orthologs for DENND5B-AS1 Gene

Paralogs for DENND5B-AS1 Gene

No data available for Paralogs for DENND5B-AS1 Gene

Variants for DENND5B-AS1 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for DENND5B-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for DENND5B-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv2473n54 CNV loss 21841781
dgv2474n54 CNV gain+loss 21841781
dgv2475n54 CNV gain 21841781
esv2760267 CNV gain+loss 21179565
esv28191 CNV loss 19812545
nsv1070522 CNV deletion 25765185
nsv1119941 CNV deletion 24896259
nsv510291 OTHER sequence alteration 20534489
nsv558088 CNV loss 21841781
nsv558089 CNV gain+loss 21841781
nsv558090 CNV gain+loss 21841781
nsv558092 CNV gain 21841781
nsv558099 CNV loss 21841781
nsv832365 CNV loss 17160897
nsv975472 CNV duplication 23825009
nsv975547 CNV duplication 23825009
nsv983305 CNV duplication 23825009

Additional Variant Information for DENND5B-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
DENND5B-AS1

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for DENND5B-AS1 Gene

Disorders for DENND5B-AS1 Gene

Additional Disease Information for DENND5B-AS1

No disorders were found for DENND5B-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for DENND5B-AS1 Gene

Publications for DENND5B-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3

Products for DENND5B-AS1 Gene

Sources for DENND5B-AS1 Gene