DENND5B-AS1 Gene (RNA Gene)

DENND5B Antisense RNA 1

GC12P031589
GIFtS:
13
See more...

Aliases for DENND5B-AS1 Gene

Subcategory (RNA class) for DENND5B-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for DENND5B-AS1 Gene

  • DENND5B Antisense RNA 1 2 3 5
  • DENND5B-AS1 2 5 165
  • DENND5B Antisense RNA 1 (Non-Protein Coding) 2 3
  • NONHSAG010814.2 91
  • NONHSAG010820.2 91
  • HSALNG0090209 164

External Ids for DENND5B-AS1 Gene

Previous GeneCards Identifiers for DENND5B-AS1 Gene

  • GC00U933706
  • GC12P031743

Summaries for DENND5B-AS1 Gene

GeneCards Summary for DENND5B-AS1 Gene

DENND5B-AS1 (DENND5B Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for DENND5B-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for DENND5B-AS1 Gene

Genomics for DENND5B-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for DENND5B-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around DENND5B-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for DENND5B-AS1 Gene

Genomic Locations for DENND5B-AS1 Gene
chr12:31,589,920-31,642,456
(GRCh38/hg38)
Size:
52,537 bases
Orientation:
Plus strand
chr12:31,742,857-31,768,600
(GRCh37/hg19)
Size:
25,744 bases
Orientation:
Plus strand

Genomic View for DENND5B-AS1 Gene

Genes around DENND5B-AS1 on UCSC Golden Path with GeneCards custom track
DENND5B-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
DENND5B-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DENND5B-AS1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for DENND5B-AS1 Gene

Proteins for DENND5B-AS1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for DENND5B-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for DENND5B-AS1 Gene

Domains & Families for DENND5B-AS1 Gene

Gene Families for DENND5B-AS1 Gene

HGNC:
genes like me logo Genes that share domains with DENND5B-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for DENND5B-AS1 Gene

Function for DENND5B-AS1 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for DENND5B-AS1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for DENND5B-AS1 Gene

Localization for DENND5B-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for DENND5B-AS1 Gene

Pathways & Interactions for DENND5B-AS1 Gene

PathCards logo

SuperPathways for DENND5B-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for DENND5B-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for DENND5B-AS1 Gene

Drugs & Compounds for DENND5B-AS1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for DENND5B-AS1 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for DENND5B-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00004C0EF1_9606 lncRNA 564 6

HGNC: 42517,

RefSeq: NR_046909,

Ensembl: ENST00000536397 (view in UCSC) ,

LncBook: HSALNT0187431,

LNCipedia: DENND5B-AS1:1,

NONCODE: NONHSAT027558.2,

URS00000D5C7D_9606 lncRNA 1106 4

Ensembl: ENST00000537346 (view in UCSC) ,

LncBook: HSALNT0187432,

LNCipedia: DENND5B-AS1:2,

NONCODE: NONHSAT027559.2,

URS00008BE89B_9606 lncRNA 1326 2

LNCipedia: DENND5B-AS1:6,

NONCODE: NONHSAT027566.2,

URS0000D5A123_9606 lncRNA 402 2

LncBook: HSALNT0187430,

LNCipedia: DENND5B-AS1:3,

URS0000D56CD2_9606 lncRNA 1642 1

LNCipedia: DENND5B-AS1:5,

DENND5B-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for DENND5B-AS1 Gene

1 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for DENND5B-AS1 Gene

No ASD Table

Relevant External Links for DENND5B-AS1 Gene

GeneLoc Exon Structure for
DENND5B-AS1

Expression for DENND5B-AS1 Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for DENND5B-AS1 Gene

mRNA expression in normal human tissues for DENND5B-AS1 Gene
mRNA expression by GTEx for DENND5B-AS1 Gene

SOURCE GeneReport for Unigene cluster for DENND5B-AS1 Gene:

Hs.627628
genes like me logo Genes that share expression patterns with DENND5B-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for DENND5B-AS1 Gene

Orthologs for DENND5B-AS1 Gene

Evolution for DENND5B-AS1 Gene

ENSEMBL:
Gene Tree for DENND5B-AS1 (if available)
TreeFam:
Gene Tree for DENND5B-AS1 (if available)

No data available for Orthologs for DENND5B-AS1 Gene

Paralogs for DENND5B-AS1 Gene

No data available for Paralogs for DENND5B-AS1 Gene

Variants for DENND5B-AS1 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Additional dbSNP identifiers (rs#s) for DENND5B-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for DENND5B-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv2473n54 CNV loss 21841781
dgv2474n54 CNV gain+loss 21841781
dgv2475n54 CNV gain 21841781
esv2760267 CNV gain+loss 21179565
esv28191 CNV loss 19812545
nsv1070522 CNV deletion 25765185
nsv1119941 CNV deletion 24896259
nsv510291 OTHER sequence alteration 20534489
nsv558088 CNV loss 21841781
nsv558089 CNV gain+loss 21841781
nsv558090 CNV gain+loss 21841781
nsv558092 CNV gain 21841781
nsv558099 CNV loss 21841781
nsv832365 CNV loss 17160897
nsv975472 CNV duplication 23825009
nsv975547 CNV duplication 23825009
nsv983305 CNV duplication 23825009

Additional Variant Information for DENND5B-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
DENND5B-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for DENND5B-AS1 Gene

Disorders for DENND5B-AS1 Gene

Additional Disease Information for DENND5B-AS1

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for DENND5B-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for DENND5B-AS1 Gene

Publications for DENND5B-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3

ExternalLinks

View latest publications for DENND5B-AS1 gene in Mastermind

Products for DENND5B-AS1 Gene

Sources for DENND5B-AS1 Gene