Aliases for DEFB109F Gene

Aliases for DEFB109F Gene

  • Defensin Beta 109F (Pseudogene) 2 3 5

External Ids for DEFB109F Gene

Summaries for DEFB109F Gene

GeneCards Summary for DEFB109F Gene

DEFB109F (Defensin Beta 109F (Pseudogene)) is a Pseudogene.

Additional gene information for DEFB109F Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for DEFB109F Gene

Genomics for DEFB109F Gene

GeneHancer (GH) Regulatory Elements for DEFB109F Gene

Promoters and enhancers for DEFB109F Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J008218 Enhancer 0.2 Ensembl 750.6 -0.4 -390 0.6 DEFB109F ENSG00000275367 lnc-FAM90A1-2 FAM66C
GH12J007969 Promoter/Enhancer 1.9 FANTOM5 ENCODE CraniofacialAtlas dbSUPER 15.4 +248.1 248098 2.7 POLR2A HDAC2 ZNF362 MYC CC2D1A L3MBTL2 MAX ZNF121 POU5F1 MNT lnc-SLC2A3-4 FAM66C SLC2A3 FOXJ2 DEFB109F LINC02449 RIMKLB NECAP1 PHC1 M6PR
GH12J007858 Promoter/Enhancer 1.7 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 10.8 +358.4 358421 3.4 CTCF ZNF362 CC2D1A RAD21 ZNF280D SP7 ZSCAN21 PRDM1 ZNF404 EGR1 ENSG00000241828 RPS20P29 lnc-NANOG-2 NANOGP1 SLC2A14 ENSG00000255356 LRRC23 DEFB109F FAM66C ATN1
GH12J008374 Enhancer 0.3 Ensembl 5.2 -155.5 -155490 0.4 CTCF ZNF362 DEFB109F piR-53609-003 piR-61945-084 LINC00937
GH12J008207 Enhancer 0.2 Ensembl 0.4 +10.3 10310 1.2 L13714-070 piR-40463 FAM66C ENSG00000276417 lnc-FAM90A1-2 DEFB109F
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around DEFB109F on UCSC Golden Path with GeneCards custom track

Genomic Locations for DEFB109F Gene

Genomic Locations for DEFB109F Gene
chr12:8,199,599-8,218,911
(GRCh38/hg38)
Size:
19,313 bases
Orientation:
Minus strand
chr12:8,352,195-8,371,507
(GRCh37/hg19)
Size:
19,313 bases
Orientation:
Minus strand

Genomic View for DEFB109F Gene

Genes around DEFB109F on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
DEFB109F Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DEFB109F Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for DEFB109F Gene

Proteins for DEFB109F Gene

Post-translational modifications for DEFB109F Gene

No Post-translational modifications

No data available for DME Specific Peptides for DEFB109F Gene

Domains & Families for DEFB109F Gene

Gene Families for DEFB109F Gene

genes like me logo Genes that share domains with DEFB109F: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for DEFB109F Gene

Function for DEFB109F Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for DEFB109F Gene

Localization for DEFB109F Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for DEFB109F Gene

Pathways & Interactions for DEFB109F Gene

PathCards logo

SuperPathways for DEFB109F Gene

No Data Available

Gene Ontology (GO) - Biological Process for DEFB109F Gene

None

No data available for Pathways by source and SIGNOR curated interactions for DEFB109F Gene

Drugs & Compounds for DEFB109F Gene

No Compound Related Data Available

Transcripts for DEFB109F Gene

mRNA/cDNA for DEFB109F Gene

(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for DEFB109F Gene

No ASD Table

Relevant External Links for DEFB109F Gene

GeneLoc Exon Structure for
DEFB109F
ECgene alternative splicing isoforms for
DEFB109F

Expression for DEFB109F Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for DEFB109F Gene

Orthologs for DEFB109F Gene

Evolution for DEFB109F Gene

ENSEMBL:
Gene Tree for DEFB109F (if available)
TreeFam:
Gene Tree for DEFB109F (if available)

No data available for Orthologs for DEFB109F Gene

Paralogs for DEFB109F Gene

No data available for Paralogs for DEFB109F Gene

Variants for DEFB109F Gene

Additional Variant Information for DEFB109F Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
DEFB109F

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for DEFB109F Gene

Disorders for DEFB109F Gene

No disorders were found for DEFB109F Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for DEFB109F Gene

Publications for DEFB109F Gene

No publications were found for DEFB109F Gene.

No data available for External Links for DEFB109F Gene

Products for DEFB109F Gene

Sources for DEFB109F Gene