Aliases for DEFB109D Gene

Aliases for DEFB109D Gene

  • Defensin Beta 109D (Pseudogene) 2 3 5
  • Defensin Beta 109 Pseudogene 3 2 3
  • Defensin, Beta 109, Pseudogene 3 2
  • Defensin, Beta 9 Pseudogene 3
  • DEFB109P3 3
  • DEFB109D 5

External Ids for DEFB109D Gene

Previous HGNC Symbols for DEFB109D Gene

  • DEFB109P3

Summaries for DEFB109D Gene

GeneCards Summary for DEFB109D Gene

DEFB109D (Defensin Beta 109D (Pseudogene)) is a Pseudogene.

Additional gene information for DEFB109D Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for DEFB109D Gene

Genomics for DEFB109D Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for DEFB109D Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J012159 Enhancer 0.2 Ensembl 0.7 -2.1 -2067 1 DEFB109D FAM90A2P USP17L2 FAM86B1 FAM66D
GH08J012170 Enhancer 0.2 Ensembl 0.4 -12.2 -12167 0.4 FAM90A2P DEFB109D FAM86B1 USP17L2 FAM66D
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around DEFB109D on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for DEFB109D Gene

Latest Assembly
chr8:12,150,895-12,158,034
(GRCh38/hg38)
Size:
7,140 bases
Orientation:
Minus strand

Previous Assembly
chr8:12,008,472-12,015,543
(GRCh37/hg19 by Entrez Gene)
Size:
7,072 bases
Orientation:
Minus strand

chr8:12,008,404-12,008,643
(GRCh37/hg19 by Ensembl)
Size:
240 bases
Orientation:
Minus strand

Alternative Locations (GRCh38/hg38)

  • chr8(PATCHES):5,588,633-5,595,708 (-)

Genomic View for DEFB109D Gene

Genes around DEFB109D on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
DEFB109D Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DEFB109D Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DEFB109D Gene

Proteins for DEFB109D Gene

Post-translational modifications for DEFB109D Gene

No Post-translational modifications

No data available for DME Specific Peptides for DEFB109D Gene

Domains & Families for DEFB109D Gene

Gene Families for DEFB109D Gene

genes like me logo Genes that share domains with DEFB109D: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for DEFB109D Gene

Function for DEFB109D Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for DEFB109D Gene

Localization for DEFB109D Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for DEFB109D Gene

Pathways & Interactions for DEFB109D Gene

PathCards logo

SuperPathways for DEFB109D Gene

No Data Available

Gene Ontology (GO) - Biological Process for DEFB109D Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for DEFB109D Gene

Drugs & Compounds for DEFB109D Gene

No Compound Related Data Available

Transcripts for DEFB109D Gene

mRNA/cDNA for DEFB109D Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for DEFB109D Gene

No ASD Table

Relevant External Links for DEFB109D Gene

GeneLoc Exon Structure for
DEFB109D

Expression for DEFB109D Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for DEFB109D Gene

Orthologs for DEFB109D Gene

Evolution for DEFB109D Gene

ENSEMBL:
Gene Tree for DEFB109D (if available)
TreeFam:
Gene Tree for DEFB109D (if available)
Alliance of Genome Resources:
Additional Orthologs for DEFB109D

No data available for Orthologs for DEFB109D Gene

Paralogs for DEFB109D Gene

No data available for Paralogs for DEFB109D Gene

Variants for DEFB109D Gene

Additional Variant Information for DEFB109D Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
DEFB109D
Leiden Open Variation Database (LOVD)
DEFB109D

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for DEFB109D Gene

Disorders for DEFB109D Gene

No disorders were found for DEFB109D Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for DEFB109D Gene

Publications for DEFB109D Gene

  1. Finishing the euchromatic sequence of the human genome. (PMID: 15496913) International Human Genome Sequencing Consortium (Nature 2004) 3

No data available for Mastermind for DEFB109D Gene

Products for DEFB109D Gene

Sources for DEFB109D Gene