Aliases for DDX59-AS1 Gene

Subcategory (RNA class) for DDX59-AS1 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for DDX59-AS1 Gene

  • DDX59 Antisense RNA 1 2 3
  • Novel Transcript 5
  • NONHSAG003903 94
  • HSALNG0009599 169
  • Lnc-CAMSAP2-1 170
  • AL445483.1 5

External Ids for DDX59-AS1 Gene

Summaries for DDX59-AS1 Gene

GeneCards Summary for DDX59-AS1 Gene

DDX59-AS1 (DDX59 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for DDX59-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for DDX59-AS1 Gene

Genomics for DDX59-AS1 Gene

GeneHancer (GH) Regulatory Elements for DDX59-AS1 Gene

Promoters and enhancers for DDX59-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J200668 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 780.1 +0.5 481 3.5 FOXK2 ZNF785 SIN3A ZNF24 ZBTB40 SP1 LCORL ZBTB6 RBPJ SMARCE1 DDX59-AS1 DDX59 piR-46343-001 piR-48348-002 KIF14 CAMSAP2 ENSG00000224818 TMEM9
GH01J200619 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 19.2 -48.8 -48785 2.6 SP1 ZBTB40 RBPJ SMARCE1 POLR2A HDAC2 ATF1 CREB1 HCFC1 ZNF362 KIF14 DDX59 DDX59-AS1 RF00017-434
GH01J200673 Enhancer 1.1 Ensembl ENCODE dbSUPER 30.4 +5.3 5306 2.8 ZNF24 ZBTB40 SMARCE1 L3MBTL2 SP1 BACH1 SP7 SMARCA4 TRIM24 IKZF1 DDX59 DDX59-AS1 CAMSAP2 lnc-CAMSAP2-4
GH01J200638 Enhancer 1.4 FANTOM5 ENCODE dbSUPER 19 -28.4 -28361 4.5 SMARCE1 POLR2A MYC CC2D1A ELF1 L3MBTL2 MAX DACH1 MNT TEAD4 DDX59 DDX59-AS1 HSALNG0009597 KIF14
GH01J200652 Enhancer 1.1 Ensembl ENCODE dbSUPER 22.5 -15.4 -15363 3.4 SMARCE1 CC2D1A ETV6 RELA MLLT1 CREM IKZF1 PKNOX1 BACH1 ZBTB33 DDX59 DDX59-AS1 HSALNG0009597 KIF14
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around DDX59-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for DDX59-AS1 Gene

Genomic Locations for DDX59-AS1 Gene
chr1:200,669,486-200,708,318
(GRCh38/hg38)
Size:
38,833 bases
Orientation:
Plus strand
chr1:200,638,635-200,663,378
(GRCh37/hg19)
Size:
24,744 bases
Orientation:
Plus strand

Genomic View for DDX59-AS1 Gene

Genes around DDX59-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
DDX59-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DDX59-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DDX59-AS1 Gene

Proteins for DDX59-AS1 Gene

Post-translational modifications for DDX59-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for DDX59-AS1 Gene

Domains & Families for DDX59-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for DDX59-AS1 Gene

Function for DDX59-AS1 Gene

Phenotypes From GWAS Catalog for DDX59-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for DDX59-AS1 Gene

Localization for DDX59-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for DDX59-AS1 Gene

Pathways & Interactions for DDX59-AS1 Gene

PathCards logo

SuperPathways for DDX59-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for DDX59-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for DDX59-AS1 Gene

Drugs & Compounds for DDX59-AS1 Gene

No Compound Related Data Available

Transcripts for DDX59-AS1 Gene

mRNA/cDNA for DDX59-AS1 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(8) RNACentral transcripts :
(3) LncBook transcripts :
(8) LNCipedia transcripts :
(3) NONCODE transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for DDX59-AS1 Gene

No ASD Table

Relevant External Links for DDX59-AS1 Gene

GeneLoc Exon Structure for
DDX59-AS1
ECgene alternative splicing isoforms for
DDX59-AS1

Expression for DDX59-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for DDX59-AS1 Gene

Orthologs for DDX59-AS1 Gene

Evolution for DDX59-AS1 Gene

ENSEMBL:
Gene Tree for DDX59-AS1 (if available)
TreeFam:
Gene Tree for DDX59-AS1 (if available)

No data available for Orthologs for DDX59-AS1 Gene

Paralogs for DDX59-AS1 Gene

No data available for Paralogs for DDX59-AS1 Gene

Variants for DDX59-AS1 Gene

Sequence variations from dbSNP and Humsavar for DDX59-AS1 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000098125 -- 200,669,701(+) G/C intron_variant
rs1000234145 -- 200,682,421(+) G/A intron_variant
rs1000241582 -- 200,672,305(+) A/C intron_variant
rs1000499510 -- 200,680,810(+) C/G intron_variant
rs1000592051 -- 200,672,616(+) A/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for DDX59-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2666349 CNV deletion 23128226
esv2764187 CNV loss 21179565
esv3575438 CNV gain 25503493
esv3588562 CNV loss 21293372
nsv1113211 CNV deletion 24896259
nsv1116620 CNV tandem duplication 24896259
nsv160731 CNV deletion 16902084

Additional Variant Information for DDX59-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
DDX59-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for DDX59-AS1 Gene

Disorders for DDX59-AS1 Gene

No disorders were found for DDX59-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for DDX59-AS1 Gene

Publications for DDX59-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 56

No data available for External Links for DDX59-AS1 Gene

Products for DDX59-AS1 Gene

Sources for DDX59-AS1 Gene