Aliases for DDX11-AS1 Gene

Data sources for DDX11-AS1 Gene:

Subcategory (RNA class) for DDX11-AS1 Gene

lncRNA

Aliases for DDX11-AS1 Gene

External Ids for DDX11-AS1 Gene

Previous GeneCards Identifiers for DDX11-AS1 Gene

  • GC12M031175

Summaries for DDX11-AS1 Gene

GeneCards Summary for DDX11-AS1 Gene

DDX11-AS1 (DDX11 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with DDX11-AS1 include Glioma Susceptibility 1.

Additional gene information for DDX11-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for DDX11-AS1 Gene

Genomics for DDX11-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for DDX11-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around DDX11-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for DDX11-AS1 Gene

Latest Assembly
chr12:31,019,434-31,073,848
(GRCh38/hg38)
Size:
54,415 bases
Orientation:
Minus strand

Previous Assembly
chr12:31,173,697-31,226,781
(GRCh37/hg19 by Entrez Gene)
Size:
53,085 bases
Orientation:
Minus strand

chr12:31,173,697-31,226,781
(GRCh37/hg19 by Ensembl)
Size:
53,085 bases
Orientation:
Minus strand

Genomic View for DDX11-AS1 Gene

Genes around DDX11-AS1 on UCSC Golden Path with GeneCards custom track
DDX11-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
DDX11-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DDX11-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DDX11-AS1 Gene

Proteins for DDX11-AS1 Gene

Post-translational modifications for DDX11-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for DDX11-AS1 Gene

Domains & Families for DDX11-AS1 Gene

Gene Families for DDX11-AS1 Gene

genes like me logo Genes that share domains with DDX11-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for DDX11-AS1 Gene

Function for DDX11-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for DDX11-AS1 Gene

Localization for DDX11-AS1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for DDX11-AS1 gene
Compartment Confidence
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for DDX11-AS1 Gene

Pathways & Interactions for DDX11-AS1 Gene

PathCards logo

SuperPathways for DDX11-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for DDX11-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for DDX11-AS1 Gene

Drugs & Compounds for DDX11-AS1 Gene

No Compound Related Data Available

Transcripts for DDX11-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for DDX11-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000035FFE6_9606 lncRNA 571 4

Ensembl: ENST00000535870 (view in UCSC) ,

LncBook: HSALNT0187358,

LNCipedia: DDX11-AS1:4,

NONCODE: NONHSAT027531.2,

URS000075B070_9606 lncRNA 2031 3

RefSeq: NR_038927,

Ensembl: ENST00000500527 (view in UCSC) ,

LNCipedia: DDX11-AS1:1,

URS000076D032_9606 lncRNA 496 2

Ensembl: ENST00000618041 (view in UCSC) ,

LNCipedia: DDX11-AS1:3,

URS0000EF644C_9606 lncRNA 3188 1

Ensembl: ENST00000669174 (view in UCSC) ,

URS0000D5CF42_9606 lncRNA 874 2

LncBook: HSALNT0187359,

LNCipedia: DDX11-AS1:2,

DDX11-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for DDX11-AS1 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for DDX11-AS1 Gene

No ASD Table

Relevant External Links for DDX11-AS1 Gene

GeneLoc Exon Structure for
DDX11-AS1

Expression for DDX11-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for DDX11-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for DDX11-AS1

SOURCE GeneReport for Unigene cluster for DDX11-AS1 Gene:

Hs.586774
genes like me logo Genes that share expression patterns with DDX11-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for DDX11-AS1 Gene

Orthologs for DDX11-AS1 Gene

Evolution for DDX11-AS1 Gene

ENSEMBL:
Gene Tree for DDX11-AS1 (if available)
TreeFam:
Gene Tree for DDX11-AS1 (if available)

No data available for Orthologs for DDX11-AS1 Gene

Paralogs for DDX11-AS1 Gene

No data available for Paralogs for DDX11-AS1 Gene

Variants for DDX11-AS1 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for DDX11-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for DDX11-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv1417n100 CNV gain 25217958
dgv17n64 CNV gain 17921354
dgv192n27 CNV gain 19166990
dgv2463n54 CNV gain 21841781
dgv61e55 CNV gain 17911159
dgv62e55 CNV gain 17911159
dgv63e55 CNV gain 17911159
dgv7e196 CNV duplication 17116639
dgv8e196 CNV duplication 17116639
esv22975 CNV gain 19812545
esv2422283 CNV duplication 17116639
esv2422447 CNV duplication 17116639
esv2658025 CNV deletion 23128226
esv2751043 CNV gain 17911159
esv2751046 CNV gain 17911159
esv2759890 CNV gain+loss 17122850
esv3581161 CNV gain 25503493
esv3629033 CNV loss 21293372
esv3629035 CNV loss 21293372
nsv1038745 CNV gain 25217958
nsv1045497 CNV gain 25217958
nsv428276 CNV gain 18775914
nsv515974 CNV gain+loss 19592680
nsv558030 CNV gain 21841781
nsv659 CNV deletion 18451855
nsv832363 CNV gain 17160897
nsv8938 CNV gain 18304495
nsv973042 CNV duplication 23825009
nsv973043 CNV duplication 23825009
nsv973044 CNV duplication 23825009
nsv975469 CNV duplication 23825009

Additional Variant Information for DDX11-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
DDX11-AS1

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for DDX11-AS1 Gene

Disorders for DDX11-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for DDX11-AS1 Gene - From: LNC

Disorder Aliases PubMed IDs
glioma susceptibility 1
  • glm1
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for DDX11-AS1

genes like me logo Genes that share disorders with DDX11-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for DDX11-AS1 Gene

Publications for DDX11-AS1 Gene

  1. PAN-cancer analysis of S-phase enriched lncRNAs identifies oncogenic drivers and biomarkers. (PMID: 29491376) Ali MM … Kanduri C (Nature communications 2018) 2 3
  2. A Long Noncoding RNA Regulates Sister Chromatid Cohesion. (PMID: 27477908) Marchese FP … Huarte M (Molecular cell 2016) 2 3
  3. Long non-coding RNA DDX11-AS1 facilitates gastric cancer progression by regulating miR-873-5p/SPC18 axis. (PMID: 32054332) Ren Z … Yang D (Artificial cells, nanomedicine, and biotechnology 2020) 3
  4. LncRNA DDX11-AS1 Promotes Bladder Cancer Occurrence Via Protecting LAMB3 from Downregulation by Sponging miR-2355-5p. (PMID: 32412777) Chen D … Wei Y (Cancer biotherapy & radiopharmaceuticals 2020) 3
  5. Long noncoding RNA DDX11-AS1 induced by YY1 accelerates colorectal cancer progression through targeting miR-873/CLDN7 axis. (PMID: 31298324) Tian JB … Dong GL (European review for medical and pharmacological sciences 2019) 3

Products for DDX11-AS1 Gene

Sources for DDX11-AS1 Gene