Aliases for DDN-AS1 Gene

Subcategory (RNA class) for DDN-AS1 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for DDN-AS1 Gene

  • DDN And PRKAG1 Antisense RNA 1 2 3 5
  • CAT1507 2 3
  • DDN-AS1 2 5
  • NONHSAG011071.2 91
  • HSALNG0090908 164

External Ids for DDN-AS1 Gene

Previous GeneCards Identifiers for DDN-AS1 Gene

  • GC12P049029
  • GC12P049033
  • GC12P049037
  • GC12P049044
  • GC12P049006
  • GC12P049010
  • GC12P049015
  • GC12P049019
  • GC12P049025

Summaries for DDN-AS1 Gene

GeneCards Summary for DDN-AS1 Gene

DDN-AS1 (DDN And PRKAG1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with DDN-AS1 include Rhabdomyosarcoma.

Additional gene information for DDN-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for DDN-AS1 Gene

Genomics for DDN-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for DDN-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J048996 Promoter/Enhancer 1.6 EPDnew Ensembl ENCODE 600.7 +0.6 554 4.2 CTCF PRDM10 ZNF629 TFE3 NFKBIZ ZNF692 BACH1 JUND LARP7 ZNF143 DDN DDN-AS1 KMT2D ARF3 WNT10B
GH12J048753 Enhancer 0.8 Ensembl ENCODE 5 -244.6 -244635 0.9 CTCF IKZF1 REST RAD21 TRIM22 ZNF600 CEBPA SCRT2 ZNF444 ZNF580 ADCY6 CACNB3 RNU6-600P KANSL2 DDN-AS1 RF00017-1134 ENSG00000257653 TEX49 MG828730-015
GH12J049017 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas 0.4 +20.7 20674 4 CREB1 GATAD2A CTCF PRDM10 REST ZNF629 IKZF1 ZNF692 POLR2A BACH1 PRKAG1 lnc-KMT2D-1 DDN NONHSAG011073.2 DDN-AS1 KMT2D
GH12J048994 Promoter/Enhancer 1.1 Ensembl ENCODE 0.7 -2.9 -2913 0.5 CTCF TEAD4 PRDM10 IKZF1 RFX5 KDM1A ZNF143 PKNOX1 REST RAD21 ENSG00000258283 DDN DDN-AS1 WNT10B
GH12J049001 Promoter 0.6 EPDnew 0.7 +2.7 2733 0.1 ZBTB48 RBM22 POLR2A SMARCA4 DDN ARF3 DDN-AS1 WNT10B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around DDN-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for DDN-AS1 Gene

Genomic Locations for DDN-AS1 Gene
chr12:48,998,347-49,019,240
(GRCh38/hg38)
Size:
20,894 bases
Orientation:
Plus strand
chr12:49,392,150-49,412,988
(GRCh37/hg19)
Size:
20,839 bases
Orientation:
Plus strand

Genomic View for DDN-AS1 Gene

Genes around DDN-AS1 on UCSC Golden Path with GeneCards custom track
DDN-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
DDN-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DDN-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DDN-AS1 Gene

Proteins for DDN-AS1 Gene

Post-translational modifications for DDN-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for DDN-AS1 Gene

Domains & Families for DDN-AS1 Gene

Gene Families for DDN-AS1 Gene

genes like me logo Genes that share domains with DDN-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for DDN-AS1 Gene

Function for DDN-AS1 Gene

Phenotypes From GWAS Catalog for DDN-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for DDN-AS1 Gene

Localization for DDN-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for DDN-AS1 Gene

Pathways & Interactions for DDN-AS1 Gene

PathCards logo

SuperPathways for DDN-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for DDN-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for DDN-AS1 Gene

Drugs & Compounds for DDN-AS1 Gene

No Compound Related Data Available

Transcripts for DDN-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for DDN-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00004146ED_9606 lncRNA 2114 3

Ensembl: ENST00000547866 (view in UCSC) ,

LncBook: HSALNT0188669,

NONCODE: NONHSAT028058.2,

URS000000529A_9606 lncRNA 934 3

Ensembl: ENST00000552284 (view in UCSC) ,

LncBook: HSALNT0188670,

NONCODE: NONHSAT028059.2,

URS00000E436F_9606 lncRNA 858 3

Ensembl: ENST00000547395 (view in UCSC) ,

LncBook: HSALNT0188671,

NONCODE: NONHSAT028060.2,

URS0000BC4562_9606 lncRNA 1430 2

HGNC: 53464,

RefSeq: NR_147178,

URS000077FA94_9606 lncRNA 1324 2

Ensembl: ENST00000552933 (view in UCSC) ,

LncBook: HSALNT0188666,

DDN-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for DDN-AS1 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for DDN-AS1 Gene

No ASD Table

Relevant External Links for DDN-AS1 Gene

GeneLoc Exon Structure for
DDN-AS1

Expression for DDN-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for DDN-AS1

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for DDN-AS1 Gene

Orthologs for DDN-AS1 Gene

Evolution for DDN-AS1 Gene

ENSEMBL:
Gene Tree for DDN-AS1 (if available)
TreeFam:
Gene Tree for DDN-AS1 (if available)

No data available for Orthologs for DDN-AS1 Gene

Paralogs for DDN-AS1 Gene

No data available for Paralogs for DDN-AS1 Gene

Variants for DDN-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for DDN-AS1 Gene

SNP ID Clinical significance and condition Chr 12 pos Variation AA Info Type
rs139469030 Likely Benign: Kabuki syndrome 49,019,138(+) G/A NON_CODING_TRANSCRIPT_VARIANT,THREE_PRIME_UTR_VARIANT
rs185652670 Likely Benign: Kabuki syndrome 49,019,135(+) A/G NON_CODING_TRANSCRIPT_VARIANT,THREE_PRIME_UTR_VARIANT
rs552111682 Likely Benign: Kabuki syndrome 49,018,976(+) T/C NON_CODING_TRANSCRIPT_VARIANT,THREE_PRIME_UTR_VARIANT
rs886049458 Uncertain Significance: Kabuki syndrome 49,019,231(+) C/T NON_CODING_TRANSCRIPT_VARIANT,THREE_PRIME_UTR_VARIANT

Additional dbSNP identifiers (rs#s) for DDN-AS1 Gene

Additional Variant Information for DDN-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
DDN-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for DDN-AS1 Gene

Disorders for DDN-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for DDN-AS1 Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
rhabdomyosarcoma
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for DDN-AS1

genes like me logo Genes that share disorders with DDN-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for DDN-AS1 Gene

Publications for DDN-AS1 Gene

  1. Identification of long non-coding RNAs that stimulate cell survival in bladder cancer. (PMID: 28415801) Dudek AM … Verhaegh GW (Oncotarget 2017) 2 3

Products for DDN-AS1 Gene

Sources for DDN-AS1 Gene