Aliases for DDIT4-AS1 Gene

Subcategory (RNA class) for DDIT4-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for DDIT4-AS1 Gene

  • DDIT4 Antisense RNA 1 2 3 5
  • DDIT4-AS1 2 5 165
  • RP11-442H21.2 2 3
  • NONHSAG006173.2 91
  • HSALNG0078773 164

External Ids for DDIT4-AS1 Gene

Summaries for DDIT4-AS1 Gene

GeneCards Summary for DDIT4-AS1 Gene

DDIT4-AS1 (DDIT4 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with DDIT4-AS1 include Retinitis Pigmentosa 3 and Retinitis Pigmentosa.

Additional gene information for DDIT4-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for DDIT4-AS1 Gene

Genomics for DDIT4-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for DDIT4-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J072270 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 600.7 +1.2 1213 8.5 ZNF221 ARHGAP35 CEBPG SP1 HNRNPL CREB1 GATAD2A CTCF ATF7 PRDM10 DDIT4 DDIT4-AS1 lnc-ASCC1-4 ECD DNAJB12 ENSG00000227540 RPL17P50 FAM149B1 DNAJC9 ANAPC16
GH10J072285 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 -7.9 -7920 7.8 PRDM10 PRDM1 RELA PKNOX1 EED SP1 RELB ESR1 HDAC2 MCM3 DNAJB12 ECD ASCC1 DDIT4 DDIT4-AS1 HSALNG0078775
GH10J072290 Enhancer 1 ENCODE dbSUPER 0.4 -15.2 -15203 0.7 JUND MTA1 ZNF740 DPF2 HDAC1 SOX6 ZFX EP300 NRF1 MGA HSALNG0078775 DDIT4 DDIT4-AS1 DNAJB12
GH10J072291 Enhancer 0.9 ENCODE dbSUPER 0.4 -16.7 -16673 1.9 PRDM10 ZIC2 ZSCAN4 PKNOX1 IKZF2 SCRT2 EED SP1 RFX1 DPF2 DNAJB12 ENSG00000272630 HSALNG0078775 DDIT4 DDIT4-AS1
GH10J072279 Enhancer 0.5 Ensembl dbSUPER 0.7 -3.6 -3621 0.4 ZFP69B ZEB2 DNAJB12 DDIT4-AS1 DDIT4 HSALNG0078775
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around DDIT4-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for DDIT4-AS1 Gene

Genomic Locations for DDIT4-AS1 Gene
chr10:72,274,914-72,275,980
(GRCh38/hg38)
Size:
1,067 bases
Orientation:
Minus strand
chr10:74,034,673-74,035,738
(GRCh37/hg19)
Size:
1,066 bases
Orientation:
Minus strand

Genomic View for DDIT4-AS1 Gene

Genes around DDIT4-AS1 on UCSC Golden Path with GeneCards custom track
DDIT4-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
DDIT4-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DDIT4-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for DDIT4-AS1 Gene

Proteins for DDIT4-AS1 Gene

Post-translational modifications for DDIT4-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for DDIT4-AS1 Gene

Domains & Families for DDIT4-AS1 Gene

Gene Families for DDIT4-AS1 Gene

genes like me logo Genes that share domains with DDIT4-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for DDIT4-AS1 Gene

Function for DDIT4-AS1 Gene

Phenotypes From GWAS Catalog for DDIT4-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for DDIT4-AS1 Gene

Localization for DDIT4-AS1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for DDIT4-AS1 gene
Compartment Confidence
mitochondrion 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for DDIT4-AS1 Gene

Pathways & Interactions for DDIT4-AS1 Gene

PathCards logo

SuperPathways for DDIT4-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for DDIT4-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for DDIT4-AS1 Gene

Drugs & Compounds for DDIT4-AS1 Gene

No Compound Related Data Available

Transcripts for DDIT4-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for DDIT4-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000037F700_9606 lncRNA 847 4

HGNC: 52379,

Ensembl: ENST00000491934 (view in UCSC) ,

LNCipedia: DDIT4-AS1:3,

NONCODE: NONHSAT013916.2,

URS0000EA216B_9606 lncRNA 849 1

LncBook: HSALNT0289458,

DDIT4-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for DDIT4-AS1 Gene

No ASD Table

Relevant External Links for DDIT4-AS1 Gene

GeneLoc Exon Structure for
DDIT4-AS1

No data available for mRNA/cDNA for DDIT4-AS1 Gene

Expression for DDIT4-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for DDIT4-AS1 Gene

Orthologs for DDIT4-AS1 Gene

Evolution for DDIT4-AS1 Gene

ENSEMBL:
Gene Tree for DDIT4-AS1 (if available)
TreeFam:
Gene Tree for DDIT4-AS1 (if available)

No data available for Orthologs for DDIT4-AS1 Gene

Paralogs for DDIT4-AS1 Gene

No data available for Paralogs for DDIT4-AS1 Gene

Variants for DDIT4-AS1 Gene

Additional Variant Information for DDIT4-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
DDIT4-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for DDIT4-AS1 Gene

Disorders for DDIT4-AS1 Gene

MalaCards: The human disease database

(2) MalaCards diseases for DDIT4-AS1 Gene - From: DISEASES

Disorder Aliases PubMed IDs
retinitis pigmentosa 3
  • rp3
retinitis pigmentosa
  • retinitis pigmentosa 1
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for DDIT4-AS1

genes like me logo Genes that share disorders with DDIT4-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for DDIT4-AS1 Gene

Publications for DDIT4-AS1 Gene

  1. Bronchial Epithelial Cells from Cystic Fibrosis Patients Express a Specific Long Non-coding RNA Signature upon Pseudomonas aeruginosa Infection. (PMID: 28611953) Balloy V … Scaria V (Frontiers in cellular and infection microbiology 2017) 2 3

Products for DDIT4-AS1 Gene

Sources for DDIT4-AS1 Gene