Aliases for DDB1 Gene
Aliases for DDB1 Gene
- Damage Specific DNA Binding Protein 1 2 3 5
- Xeroderma Pigmentosum Group E-Complementing Protein 3 4
- UV-Damaged DNA-Binding Protein 1 3 4
- UV-Damaged DNA-Binding Factor 3 4
- DNA Damage-Binding Protein A 3 4
- HBV X-Associated Protein 1 3 4
- XPE-Binding Factor 3 4
- DDB P127 Subunit 3 4
- UV-DDB 1 3 4
- XPE-BF 3 4
- XAP-1 3 4
External Ids for DDB1 Gene
- HGNC: 2717
- Entrez Gene: 1642
- Ensembl: ENSG00000167986
- OMIM: 600045
- UniProtKB: Q16531
Previous GeneCards Identifiers for DDB1 Gene
- GC11P063499
- GC11M062579
- GC11M060842
- GC11M060823
- GC11M061066
- GC11M057394
Summaries for DDB1 Gene
-
The protein encoded by this gene is the large subunit (p127) of the heterodimeric DNA damage-binding (DDB) complex while another protein (p48) forms the small subunit. This protein complex functions in nucleotide-excision repair and binds to DNA following UV damage. Defective activity of this complex causes the repair defect in patients with xeroderma pigmentosum complementation group E (XPE) - an autosomal recessive disorder characterized by photosensitivity and early onset of carcinomas. However, it remains for mutation analysis to demonstrate whether the defect in XPE patients is in this gene or the gene encoding the small subunit. In addition, Best vitelliform mascular dystrophy is mapped to the same region as this gene on 11q, but no sequence alternations of this gene are demonstrated in Best disease patients. The protein encoded by this gene also functions as an adaptor molecule for the cullin 4 (CUL4) ubiquitin E3 ligase complex by facilitating the binding of substrates to this complex and the ubiquitination of proteins. [provided by RefSeq, May 2012]
GeneCards Summary for DDB1 Gene
DDB1 (Damage Specific DNA Binding Protein 1) is a Protein Coding gene. Diseases associated with DDB1 include Xeroderma Pigmentosum, Complementation Group E and Xeroderma Pigmentosum Group E. Among its related pathways are Transcription-Coupled Nucleotide Excision Repair (TC-NER) and Nucleotide excision repair. Gene Ontology (GO) annotations related to this gene include nucleic acid binding and damaged DNA binding. An important paralog of this gene is SF3B3.
UniProtKB/Swiss-Prot for DDB1 Gene
-
Required for DNA repair. Binds to DDB2 to form the UV-damaged DNA-binding protein complex (the UV-DDB complex). The UV-DDB complex may recognize UV-induced DNA damage and recruit proteins of the nucleotide excision repair pathway (the NER pathway) to initiate DNA repair. The UV-DDB complex preferentially binds to cyclobutane pyrimidine dimers (CPD), 6-4 photoproducts (6-4 PP), apurinic sites and short mismatches. Also appears to function as a component of numerous distinct DCX (DDB1-CUL4-X-box) E3 ubiquitin-protein ligase complexes which mediate the ubiquitination and subsequent proteasomal degradation of target proteins. The functional specificity of the DCX E3 ubiquitin-protein ligase complex is determined by the variable substrate recognition component recruited by DDB1. DCX(DDB2) (also known as DDB1-CUL4-ROC1, CUL4-DDB-ROC1 and CUL4-DDB-RBX1) may ubiquitinate histone H2A, histone H3 and histone H4 at sites of UV-induced DNA damage. The ubiquitination of histones may facilitate their removal from the nucleosome and promote subsequent DNA repair. DCX(DDB2) also ubiquitinates XPC, which may enhance DNA-binding by XPC and promote NER. DCX(DTL) plays a role in PCNA-dependent polyubiquitination of CDT1 and MDM2-dependent ubiquitination of TP53 in response to radiation-induced DNA damage and during DNA replication. DCX(ERCC8) (the CSA complex) plays a role in transcription-coupled repair (TCR). May also play a role in ubiquitination of CDKN1B/p27kip when associated with CUL4 and SKP2.
Additional gene information for DDB1 Gene
- Monarch Initiative
- Search for DDB1 at DataMed
- Search for DDB1 at HumanCyc
No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DDB1 Gene
Genomics for DDB1 Gene
GeneHancer (GH) Regulatory Elements for DDB1 Gene
Promoters and enhancers for DDB1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data dump
GeneHancers around DDB1 on UCSC Golden Path with GeneCards custom track
Regulatory Element Products
Genomic Locations for DDB1 Gene
Genomic Locations for DDB1 Gene
- chr11:61,299,447-61,342,596
- (GRCh38/hg38)
- Size:
- 43,150 bases
- Orientation:
- Minus strand
- chr11:61,066,919-61,110,068
- (GRCh37/hg19)
Genomic View for DDB1 Gene
Genes around DDB1 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 11q12.2 by Ensembl
- 11q12.2 by Entrez Gene
- 11q12.2 by HGNC
DDB1 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for DDB1 Gene
Proteins for DDB1 Gene
-
Protein details for DDB1 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- Q16531-DDB1_HUMAN
- Recommended name:
- DNA damage-binding protein 1
- Protein Accession:
- Q16531
- A6NG77
- B2R648
- B4DG00
- O15176
- Q13289
- Q58F96
Protein attributes for DDB1 Gene
- Size:
- 1140 amino acids
- Molecular mass:
- 126968 Da
- Quaternary structure:
-
- Component of the UV-DDB complex which includes DDB1 and DDB2; the heterodimer dimerizes to give rise to a heterotetramer when bound to damaged DNA (PubMed:22822215). The UV-DDB complex interacts with monoubiquitinated histone H2A and binds to XPC via the DDB2 subunit. Component of numerous DCX (DDB1-CUL4-X-box) E3 ubiquitin-protein ligase complexes which consist of a core of DDB1, CUL4A or CUL4B and RBX1. DDB1 may recruit specific substrate targeting subunits to the DCX complex. These substrate targeting subunits are generally known as DCAF (DDB1- and CUL4-associated factor) or CDW (CUL4-DDB1-associated WD40-repeat) proteins. Interacts with AMBRA1, ATG16L1, BTRC, CRBN, DCAF1, DCAF4, DCAF5, DCAF6, DCAF7, DCAF8, DCAF9, DCAF10, DCAF11, DCAF12, DCAF15, DCAF16, DCAF17, DDA1, DET1, DTL, ERCC8, FBXW5, FBXW8, GRWD1, KATNB1, NLE1, NUP43, PAFAH1B1, PHIP, PWP1, RBBP4, RBBP5, RBBP7, RFWD2, SNRNP40, DCAF1, WDR5, WDR5B, WDR12, WDR26, WDR39, WDR42, WDR53, WDR59, WDR61, WSB1, WSB2, LRWD1 and WDTC1. DCX complexes may associate with the COP9 signalosome, and this inhibits the E3 ubiquitin-protein ligase activity of the complex. Interacts with NF2, TSC1 and TSC2. Interaction with SV5 protein V may prevent the recruitment of DCAF proteins to DCX complexes. Interacts with AGO1 and AGO2. Associates with the E3 ligase complex containing DYRK2, EDD/UBR5, DDB1 and DCAF1 proteins (EDVP complex). Interacts directly with DYRK2. DCX(DTL) complex interacts with FBXO11; does not ubiquitinate and degradate FBXO11. Interacts with TRPC4AP (PubMed:19966799).
- (Microbial infection) Interacts with Simian virus 5 protein V. Interacts with the hepatitis B virus protein HBX, the woodchuck hepatitis virus X protein WHX and the paramyxovirus protein SV5-V; these viral proteins contain a short helical motif that competes for the same binding site as the N-terminal helical motif found in endogenous DCAF proteins (PubMed:19966799).
Three dimensional structures from OCA and Proteopedia for DDB1 Gene
Protein Expression for DDB1 Gene
Post-translational modifications for DDB1 Gene
- Phosphorylated by ABL1.
- Ubiquitinated by CUL4A. Subsequently degraded by ubiquitin-dependent proteolysis.
- Ubiquitination at Lys92, Lys141, posLast=153153, Lys191, posLast=298298, posLast=383383, Lys408, Lys484, Lys570, Lys579, posLast=723723, Lys823, posLast=857857, Lys897, posLast=917917, posLast=936936, Lys1067, Lys1081, Lys1121, and Lys1131
- Modification sites at PhosphoSitePlus
Other Protein References for DDB1 Gene
- ENSEMBL proteins:
- REFSEQ proteins:
Antibody Products
- Novus Biologicals Antibodies for DDB1
-
Abcam antibodies for DDB1
- Invitrogen Antibodies for DDB1
- GeneTex DDB1 antibody for DDB1
-
Santa Cruz Biotechnology (SCBT) Antibodies for DDB1
- Sino Biological Antibodies for DDB1
Protein Products
-
OriGene Purified Proteins for DDB1
- Search Origene for MassSpec and Protein Over-expression Lysates for DDB1
- Origene Custom Protein Services for DDB1
- Novus Biologicals proteins for DDB1
- Search GeneTex for Proteins for DDB1
-
Abcam proteins for DDB1
Assay Products
No data available for DME Specific Peptides for DDB1 Gene
Domains & Families for DDB1 Gene
Gene Families for DDB1 Gene
- HGNC:
- Human Protein Atlas (HPA):
-
- Plasma proteins
- Predicted intracellular proteins
Protein Domains for DDB1 Gene
- InterPro:
- Blocks:
- ProtoNet:
Suggested Antigen Peptide Sequences for DDB1 Gene
Graphical View of Domain Structure for InterPro Entry
Q16531UniProtKB/Swiss-Prot:
DDB1_HUMAN :- The core of the protein consists of three WD40 beta-propeller domains.
- Belongs to the DDB1 family.
- Domain:
-
- The core of the protein consists of three WD40 beta-propeller domains.
- Family:
-
- Belongs to the DDB1 family.
Function for DDB1 Gene
Molecular function for DDB1 Gene
- GENATLAS Biochemistry:
- damage specific DNA binding protein 1,p127 subunit,absent from cell strains from a minority of individuals with XP-E,possibly involved in nucleotide excision repair
- UniProtKB/Swiss-Prot Function:
- Required for DNA repair. Binds to DDB2 to form the UV-damaged DNA-binding protein complex (the UV-DDB complex). The UV-DDB complex may recognize UV-induced DNA damage and recruit proteins of the nucleotide excision repair pathway (the NER pathway) to initiate DNA repair. The UV-DDB complex preferentially binds to cyclobutane pyrimidine dimers (CPD), 6-4 photoproducts (6-4 PP), apurinic sites and short mismatches. Also appears to function as a component of numerous distinct DCX (DDB1-CUL4-X-box) E3 ubiquitin-protein ligase complexes which mediate the ubiquitination and subsequent proteasomal degradation of target proteins. The functional specificity of the DCX E3 ubiquitin-protein ligase complex is determined by the variable substrate recognition component recruited by DDB1. DCX(DDB2) (also known as DDB1-CUL4-ROC1, CUL4-DDB-ROC1 and CUL4-DDB-RBX1) may ubiquitinate histone H2A, histone H3 and histone H4 at sites of UV-induced DNA damage. The ubiquitination of histones may facilitate their removal from the nucleosome and promote subsequent DNA repair. DCX(DDB2) also ubiquitinates XPC, which may enhance DNA-binding by XPC and promote NER. DCX(DTL) plays a role in PCNA-dependent polyubiquitination of CDT1 and MDM2-dependent ubiquitination of TP53 in response to radiation-induced DNA damage and during DNA replication. DCX(ERCC8) (the CSA complex) plays a role in transcription-coupled repair (TCR). May also play a role in ubiquitination of CDKN1B/p27kip when associated with CUL4 and SKP2.
Phenotypes From GWAS Catalog for DDB1 Gene
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0003676 | nucleic acid binding | IEA | -- |
| GO:0003677 | DNA binding | TAS | 8798680 |
| GO:0003684 | contributes_to damaged DNA binding | IDA | 22334663 |
| GO:0005515 | protein binding | IPI | 9418871 |
| GO:0030674 | protein binding, bridging | IPI | 14739464 |
Phenotypes for DDB1 Gene
- MGI mutant phenotypes for DDB1:
- inferred from 2 alleles
- GenomeRNAi human phenotypes for DDB1:
-
- Increased gamma-H2AX phosphorylation
- Decreased viability
- Negative genetic interaction between MUS81-/- and MUS81+/+
- Decreased viability in esophageal squamous lineage
- Increased shRNA abundance (Z-score > 2)
- Decreased shRNA abundance (Z-score < -2)
- Increased transferrin (TF) endocytosis
- Decreased number of cells in monopolar arrest with EMD534085 (a Kinesin-5 inhibitor)
- Increased G1 DNA content
- G0/1 arrest
- Negative genetic interaction between PTTG1-/- and PTTG1+/+
- Decreased homologous recombination repair frequency
- Increased cell number in S
- Increased viability with MLN4924 (a NAE inhibitor)
- Increased circadian period length
- Decreased viability of wild-type and TP53 knockout cells
- Increased G1 length, increased G2 length
- Increased telomere dysfunction-induced foci (TIF) formation
Animal Models for DDB1 Gene
- MGI Knock Outs for DDB1:
-
- Ddb1 tm1.1Spg
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Cyagen custom Knockout/knockin (KOKI) mouse models for DDB1
-
-
ViGene Biosciences lentiviral particle packaged cDNA for DDB1 gene
-
ViGene Biosciences ready-to-package AAV shRNAs for DDB1 gene
- Search ViGene Biosciences for DDB1
CRISPR Products
-
OriGene CRISPR knockouts for DDB1
- genomics-online: gRNA clones - Search results for 80 available DDB1 gene related products
- Overview of 80 available DDB1 gene related products
- Applied Biological Materials CRISPR for DDB1
-
Vectors and viruses for KO, Activation, Repression, and more
-
Santa Cruz Biotechnology (SCBT) CRISPR for DDB1
- GenScript: Design CRISPR guide RNA sequences for DDB1
miRNA for DDB1 Gene
- miRTarBase miRNAs that target DDB1
-
- hsa-mir-193b-3p (MIRT016411)
- hsa-mir-941 (MIRT036583)
- hsa-mir-186-5p (MIRT045270)
- hsa-mir-149-5p (MIRT045485)
- hsa-mir-30c-5p (MIRT047942)
- hsa-mir-26a-5p (MIRT050184)
- hsa-mir-3200-3p (MIRT052820)
- hsa-mir-493-3p (MIRT489974)
- hsa-mir-4330 (MIRT489975)
- hsa-mir-1304-3p (MIRT489976)
- hsa-mir-4257 (MIRT489977)
- hsa-mir-6847-5p (MIRT489978)
- hsa-mir-6876-5p (MIRT489979)
- hsa-mir-5197-3p (MIRT489980)
- hsa-mir-4476 (MIRT489981)
- hsa-mir-559 (MIRT489982)
- hsa-mir-548y (MIRT489983)
- hsa-mir-548w (MIRT489984)
- hsa-mir-548o-5p (MIRT489985)
- hsa-mir-548j-5p (MIRT489986)
- hsa-mir-548i (MIRT489987)
- hsa-mir-548h-5p (MIRT489988)
- hsa-mir-548d-5p (MIRT489989)
- hsa-mir-548c-5p (MIRT489990)
- hsa-mir-548bb-5p (MIRT489991)
- hsa-mir-548b-5p (MIRT489992)
- hsa-mir-548ay-5p (MIRT489993)
- hsa-mir-548au-5p (MIRT489994)
- hsa-mir-548as-5p (MIRT489995)
- hsa-mir-548ar-5p (MIRT489996)
- hsa-mir-548aq-5p (MIRT489997)
- hsa-mir-548ap-5p (MIRT489998)
- hsa-mir-548am-5p (MIRT489999)
- hsa-mir-548ak (MIRT490000)
- hsa-mir-548ae-5p (MIRT490001)
- hsa-mir-548ad-5p (MIRT490002)
- hsa-mir-548ab (MIRT490003)
- hsa-mir-548a-5p (MIRT490004)
- hsa-mir-548n (MIRT490005)
- hsa-mir-3941 (MIRT611530)
- hsa-mir-7162-5p (MIRT611531)
- hsa-mir-516b-3p (MIRT611532)
- hsa-mir-516a-3p (MIRT611533)
- hsa-mir-4789-3p (MIRT611534)
- hsa-mir-603 (MIRT611535)
- hsa-mir-362-3p (MIRT611536)
- hsa-mir-329-3p (MIRT611537)
- hsa-mir-8485 (MIRT611538)
miRNA Products
- Search ViGene Biosciences for DDB1
Inhibitory RNA Products
- Origene shrna, sirna, and RNAi products in human, mouse, rat for DDB1
- Browse OriGene Inhibitory RNA Products For DDB1
- genomics-online: shRNA clones - Search results for 80 available DDB1 gene related products
- Overview of 80 available DDB1 gene related products
-
ViGene Biosciences ready-to-package AAV shRNAs for DDB1 gene
Clone Products
- Sino Biological Human cDNA Clone for DDB1
- VectorBuilder custom plasmid, inducible vectors for DDB1
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for DDB1
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- Addgene plasmids for DDB1
- Applied Biological Materials Clones for DDB1
-
Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more
Cell Line Products
-
ViGene Biosciences adenoviral particle packaged cDNA for DDB1 gene
-
ViGene Biosciences lentiviral particle packaged cDNA for DDB1 gene
-
ViGene Biosciences ready-to-package AAV shRNAs for DDB1 gene
No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for DDB1 Gene
Localization for DDB1 Gene
Subcellular locations from UniProtKB/Swiss-Prot for DDB1 Gene
- Cytoplasm. Nucleus. Note=Primarily cytoplasmic. Translocates to the nucleus following UV irradiation and subsequently accumulates at sites of DNA damage.
| Compartment | Confidence |
|---|---|
| extracellular | 5 |
| nucleus | 5 |
| cytosol | 3 |
| mitochondrion | 2 |
| peroxisome | 1 |
- Nucleoplasm (4)
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0000784 | nuclear chromosome, telomeric region | HDA,IDA | 19135898 |
| GO:0005615 | extracellular space | HDA,IDA | 22664934 |
| GO:0005634 | nucleus | IDA,IEA | 18593899 |
| GO:0005654 | nucleoplasm | TAS | -- |
| GO:0005737 | cytoplasm | IDA,IEA | 18593899 |
Pathways & Interactions for DDB1 Gene
| SuperPathway | Contained pathways | ||
|---|---|---|---|
| 1 | Transcription-Coupled Nucleotide Excision Repair (TC-NER) | ||
| 2 | Nucleotide excision repair | ||
| 3 | Kaposi's sarcoma-associated herpesvirus infection |
.33
|
|
| 4 | Ubiquitin mediated proteolysis | ||
| 5 | Viral carcinogenesis | ||
Pathways by source for DDB1 Gene
12 Reactome pathways for DDB1 Gene
4 KEGG pathways for DDB1 Gene
1 Cell Signaling Technology pathway for DDB1 Gene
UniProtKB/Swiss-Prot Q16531-DDB1_HUMAN
- Pathway: Protein modification; protein ubiquitination.
Interacting Proteins for DDB1 Gene
Selected Interacting proteins:
Q16531-DDB1_HUMAN
ENSP00000301764
for DDB1 Gene via
MINT
STRING
IID
UniProtKB
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0000715 | nucleotide-excision repair, DNA damage recognition | TAS | -- |
| GO:0000717 | nucleotide-excision repair, DNA duplex unwinding | TAS | -- |
| GO:0006281 | DNA repair | IEA,TAS | 8798680 |
| GO:0006283 | transcription-coupled nucleotide-excision repair | TAS | -- |
| GO:0006289 | nucleotide-excision repair | TAS | 8407967 |
Transcripts for DDB1 Gene
mRNA/cDNA for DDB1 Gene
- (1) REFSEQ mRNAs :
- (16) Additional mRNA sequences :
- (1044) Selected AceView cDNA sequences:
- (25) Ensembl transcripts including schematic representations, and UCSC links where relevant :
Unigene Clusters for DDB1 Gene
CRISPR Products
-
OriGene CRISPR knockouts for DDB1
- genomics-online: gRNA clones - Search results for 80 available DDB1 gene related products
- Overview of 80 available DDB1 gene related products
- Applied Biological Materials CRISPR for DDB1
-
Vectors and viruses for KO, Activation, Repression, and more
-
Santa Cruz Biotechnology (SCBT) CRISPR for DDB1
- GenScript: Design CRISPR guide RNA sequences for DDB1
miRNA Products
- Search ViGene Biosciences for DDB1
Inhibitory RNA Products
- Origene shrna, sirna, and RNAi products in human, mouse, rat for DDB1
- Browse OriGene Inhibitory RNA Products For DDB1
- genomics-online: shRNA clones - Search results for 80 available DDB1 gene related products
- Overview of 80 available DDB1 gene related products
-
ViGene Biosciences ready-to-package AAV shRNAs for DDB1 gene
Clone Products
- Sino Biological Human cDNA Clone for DDB1
- VectorBuilder custom plasmid, inducible vectors for DDB1
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for DDB1
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- Addgene plasmids for DDB1
- Applied Biological Materials Clones for DDB1
-
Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more
| ExUns: | 1 | ^ | 2a | · | 2b | ^ | 3 | ^ | 4 | ^ | 5a | · | 5b | ^ | 6 | ^ | 7a | · | 7b | ^ | 8 | ^ | 9 | ^ | 10 | ^ | 11 | ^ | 12 | ^ | 13 | ^ | 14 | ^ | 15 | ^ | 16 | ^ | 17 | ^ | 18a | · | 18b | ^ | 19 | ^ | 20 | ^ | 21 | ^ | 22 | ^ |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SP1: | - | - | ||||||||||||||||||||||||||||||||||||||||||||||||||
| SP2: | - | |||||||||||||||||||||||||||||||||||||||||||||||||||
| SP3: | - | - | - | - | - | |||||||||||||||||||||||||||||||||||||||||||||||
| SP4: | - | - | - | |||||||||||||||||||||||||||||||||||||||||||||||||
| SP5: | - | - | - | - | ||||||||||||||||||||||||||||||||||||||||||||||||
| SP6: | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| SP7: | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| SP8: | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| SP9: |
| ExUns: | 23 | ^ | 24 | ^ | 25a | · | 25b | ^ | 26a | · | 26b | · | 26c | · | 26d | ^ | 27a | · | 27b | · | 27c | · | 27d | · | 27e | ^ | 28 | ^ | 29a | · | 29b |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SP1: | - | - | |||||||||||||||||||||||||||||
| SP2: | |||||||||||||||||||||||||||||||
| SP3: | - | - | - | - | - | - | |||||||||||||||||||||||||
| SP4: | |||||||||||||||||||||||||||||||
| SP5: | |||||||||||||||||||||||||||||||
| SP6: | - | - | - | ||||||||||||||||||||||||||||
| SP7: | - | ||||||||||||||||||||||||||||||
| SP8: | |||||||||||||||||||||||||||||||
| SP9: |
Expression for DDB1 Gene
mRNA expression in embryonic tissues and stem cells from LifeMap Discovery
-
Heart (Cardiovascular System)
- Atrioventricular Canal Cells Atrioventricular Canal
- Outflow Tract
- Brain (Nervous System)
- Intestine (Gastrointestinal Tract)
- Bone (Muscoskeletal System)
-
Uterus (Reproductive System)
-
Colon (Gastrointestinal Tract)
-
Prostate (Endocrine System)
-
Placenta (Extraembryonic Tissues)
-
Thyroid (Endocrine System)
-
Kidney (Urinary System)
-
Testis (Reproductive System)
-
Adrenal Gland (Endocrine System)
-
Ovary (Reproductive System)
This gene is overexpressed in Lymph node (6.9).
Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for DDB1 Gene
- Elite partner
NURSA nuclear receptor signaling pathways regulating expression of DDB1 Gene:
DDB1SOURCE GeneReport for Unigene cluster for DDB1 Gene:
Hs.290758Evidence on tissue expression from TISSUES for DDB1 Gene
- Nervous system(5)
- Lung(4.8)
- Skin(4.7)
- Liver(4.6)
- Blood(4.5)
- Eye(4.2)
- Intestine(3.8)
- Kidney(2.9)
- Heart(2.7)
- Adrenal gland(2.4)
- Muscle(2.1)
- Pancreas(2.1)
Phenotype-based relationships between genes and organs from Gene ORGANizer for DDB1 Gene
Germ Layers:
- ectoderm
Systems:
- integumentary
Regions:
General:
- skin
Primer Products
-
OriGene qPCR primer pairs and template standards for DDB1
-
OriGene qPCR primer pairs for DDB1
- genomics-online: primer clones - Search results for 80 available DDB1 gene related products
- Overview of 80 available DDB1 gene related products
Gene Expression Assay Products
No data available for mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for DDB1 Gene
Orthologs for DDB1 Gene
This gene was present in the common ancestor of eukaryotes.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| chimpanzee (Pan troglodytes) |
Mammalia | DDB1 33 34 |
|
||
| platypus (Ornithorhynchus anatinus) |
Mammalia | DDB1 34 |
|
OneToOne | |
| dog (Canis familiaris) |
Mammalia | DDB1 33 34 |
|
||
| cow (Bos Taurus) |
Mammalia | DDB1 33 34 |
|
||
| mouse (Mus musculus) |
Mammalia | Ddb1 33 16 34 |
|
||
| rat (Rattus norvegicus) |
Mammalia | Ddb1 33 |
|
||
| oppossum (Monodelphis domestica) |
Mammalia | DDB1 34 |
|
OneToOne | |
| chicken (Gallus gallus) |
Aves | DDB1 33 34 |
|
||
| lizard (Anolis carolinensis) |
Reptilia | DDB1 34 |
|
OneToOne | |
| tropical clawed frog (Silurana tropicalis) |
Amphibia | ddb1 33 |
|
||
| Str.4452 33 |
|
||||
| African clawed frog (Xenopus laevis) |
Amphibia | MGC68476 33 |
|
||
| zebrafish (Danio rerio) |
Actinopterygii | ddb1 33 34 34 |
|
||
| zgc63840 33 |
|
||||
| rainbow trout (Oncorhynchus mykiss) |
Actinopterygii | Omy.752 33 |
|
||
| African malaria mosquito (Anopheles gambiae) |
Insecta | AgaP_AGAP002472 33 |
|
||
| fruit fly (Drosophila melanogaster) |
Insecta | pic 33 34 |
|
||
| DDB1 35 |
|
|
|||
| worm (Caenorhabditis elegans) |
Secernentea | M18.5 35 |
|
|
|
| ddb-1 34 |
|
OneToOne | |||
| baker's yeast (Saccharomyces cerevisiae) |
Saccharomycetes | RSE1 34 |
|
OneToMany | |
| thale cress (Arabidopsis thaliana) |
eudicotyledons | DDB1A 33 |
|
||
| rice (Oryza sativa) |
Liliopsida | Os05g0592400 33 |
|
||
| Os.419 33 |
|
||||
| barley (Hordeum vulgare) |
Liliopsida | Hv.5462 33 |
|
||
| wheat (Triticum aestivum) |
Liliopsida | Ta.14606 33 |
|
||
| sea squirt (Ciona savignyi) |
Ascidiacea | -- 34 |
|
OneToOne | |
| sea squirt (Ciona intestinalis) |
Ascidiacea | Cin.8274 33 |
|
- Species where no ortholog for DDB1 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
Paralogs for DDB1 Gene
Variants for DDB1 Gene
| SNP ID | Clin | Chr 11 pos | Variation | AA Info | Type |
|---|---|---|---|---|---|
| rs1000166510 | -- | 61,301,708(-) | G/A | intron_variant | |
| rs1000265033 | -- | 61,324,165(-) | G/C | intron_variant | |
| rs1000432082 | -- | 61,311,292(-) | A/G | intron_variant | |
| rs1000463962 | -- | 61,312,412(-) | T/G | intron_variant | |
| rs1000506153 | -- | 61,305,326(-) | G/A | intron_variant |
Residual Variation Intolerance Score:
1.33% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score:
0.70;
14.87% of all genes are more intolerant (likely to be disease-causing)
Additional Variant Information for DDB1 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- DDB1
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for DDB1 Gene
Disorders for DDB1 Gene
| Disorder | Aliases | PubMed IDs |
|---|---|---|
| xeroderma pigmentosum, complementation group e |
|
|
| xeroderma pigmentosum group e |
|
|
| hepatitis b |
|
|
| xeroderma pigmentosum, variant type |
|
|
| cockayne syndrome |
|
|
Search DDB1 in MalaCards
View complete list of genes associated with diseases
Additional Disease Information for DDB1
No data available for UniProtKB/Swiss-Prot and Genatlas for DDB1 Gene
Publications for DDB1 Gene
- Protein kinase DYRK2 is a scaffold that facilitates assembly of an E3 ligase. (PMID: 19287380) Maddika S … Chen J (Nature cell biology 2009) 3 4 22 58
- The cullin 4B-based UV-damaged DNA-binding protein ligase binds to UV-damaged chromatin and ubiquitinates histone H2A. (PMID: 18593899) Guerrero-Santoro J … Rapić-Otrin V (Cancer research 2008) 3 4 22 58
- Human immunodeficiency virus type 1 Vpr-binding protein VprBP, a WD40 protein associated with the DDB1-CUL4 E3 ubiquitin ligase, is essential for DNA replication and embryonic development. (PMID: 18606781) McCall CM … Xiong Y (Molecular and cellular biology 2008) 3 4 22 58
- WD40 protein FBW5 promotes ubiquitination of tumor suppressor TSC2 by DDB1-CUL4-ROC1 ligase. (PMID: 18381890) Hu J … Xiong Y (Genes & development 2008) 3 4 22 58
- PCNA is a cofactor for Cdt1 degradation by CUL4/DDB1-mediated N-terminal ubiquitination. (PMID: 16407252) Senga T … Dutta A (The Journal of biological chemistry 2006) 3 4 22 58
Products for DDB1 Gene
- Browse R&D Systems for Antibodies
- Browse R&D Systems for Human Recombinant Proteins
- Browse R&D Systems for biochemical assays
- Browse Human Proteins and Enzymes
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- Browse Immunoprecipitation Assays
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- Browse Proteome Profiler Antibody Arrays
- Browse Small Molecules
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- OriGene Purified Proteins for DDB1
- Search Origene for MassSpec and Protein Over-expression Lysates for DDB1
- Origene Custom Protein Services for DDB1
- Origene shrna, sirna, and RNAi products in human, mouse, rat for DDB1
- Browse OriGene Inhibitory RNA Products For DDB1
- OriGene qPCR primer pairs and template standards for DDB1
- OriGene qPCR primer pairs for DDB1
- OriGene CRISPR knockouts for DDB1
- OriGene ORF clones in human for DDB1
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For DDB1
- GenScript: Next-day shipping of latest version cDNA ORF clones for DDB1 in any vector
- GenScript Custom Purified and Recombinant Proteins Services for DDB1
- GenScript Custom Assay Services for DDB1
- GenScript Custom overexpressing Cell Line Services for DDB1
- GenScript: Design CRISPR guide RNA sequences for DDB1
- Design optimal peptide antigens
- CloneReady with Over 120,000 Genes
- Gene Synthesis: Any Gene in Any Vector
- Vector-based siRNA and miRNA, Ready for Transfection
- Gene Mutant Library, Variants up to 10^11
- Plasmid Preparation
- GenScript Custom Peptide Services for DDB1
- Sino Biological Human cDNA Clone for DDB1
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Recombinant Proteins
- Sino Biological Antibodies for DDB1
- Browse Sino Biological Assays
- Browse Sino Biological ELISA Kits
- Browse Sino Biological ELISA Pair Sets
- Browse Sino Biological CRO Services
- Browse Sino Biological Control Vectors
- Sino Biological Transfection Reagent
- Sino Biological Anti-His Tag Antibody
- Novus Biologicals Antibodies for DDB1
- Novus Biologicals proteins for DDB1
- Novus Biologicals
- Novus Biologicals Tissue Microarrays
- Browse Antibodies
- Browse Peptides and Proteins
- Browse Lysates
- Browse ELISA Kits
- Abcam antibodies for DDB1
- Abcam proteins for DDB1
- Find your target
- Browse Primary Antibodies
- Browse Conjugated Primary Antibodies
- Browse Secondary Antibodies
- Browse ELISA Kits
- Browse Matched Antibody Pairs
- Browse Proteins and Peptides
- Search Knockout (KO) Validated Antibodies
- Browse Monoclonal Antibodies
- Browse Recombinant Antibodies
- Browse Antibodies at Cloud-Clone Corp.
- Browse Proteins at Cloud-Clone Corp.
- Browse Assay Kits at Cloud-Clone Corp.
- Browse Knockouts at Cloud-Clone Corp.
- Browse Knockins at Cloud-Clone Corp.
- Cloud-Clone Corp. disease models service
- Browse cDNA clones at Cloud-Clone Corp.
- Browse primers at Cloud-Clone Corp.
- Cloud-Clone Corp. primary cells service
- Cyagen custom Knockout/knockin (KOKI) mouse models for DDB1
- VectorBuilder custom plasmid, inducible vectors for DDB1
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for DDB1
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- Addgene plasmids for DDB1
- antibodies-online: Search results for 93 available DDB1 Antibodies ranked by validation data
- Compare Top DDB1 Antibodies
- antibodies-online: Search results for 5 available DDB1 Elisa Kits ranked by validation data
- Compare Top DDB1 Elisa Kits
- antibodies-online: Search results for 4 available DDB1 Proteins ranked by validation data
- Compare Top DDB1 Proteins
- GeneTex DDB1 antibody for DDB1
- Search GeneTex for Proteins for DDB1
- ViGene Biosciences adenoviral particle packaged cDNA for DDB1 gene
- ViGene Biosciences lentiviral particle packaged cDNA for DDB1 gene
- ViGene Biosciences ready-to-package AAV shRNAs for DDB1 gene
- Search ViGene Biosciences for DDB1
- Santa Cruz Biotechnology (SCBT) Antibodies for DDB1
- Search Santa Cruz Biotechnology (SCBT) for DDB1 siRNA/shRNA
- Santa Cruz Biotechnology (SCBT) CRISPR for DDB1
- genomics-online: cdna clones - Search results for 80 available DDB1 gene related products
- Overview of 80 available DDB1 gene related products
- orf clones - Search results for 80 available DDB1 gene related products
- Overview of 80 available DDB1 gene related products
- genomics-online: gRNA clones - Search results for 80 available DDB1 gene related products
- Overview of 80 available DDB1 gene related products
- genomics-online: primer clones - Search results for 80 available DDB1 gene related products
- Overview of 80 available DDB1 gene related products
- genomics-online: shRNA clones - Search results for 80 available DDB1 gene related products
- Overview of 80 available DDB1 gene related products
Sources for DDB1 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) ASD
- (29) ECgene
- (30) GeneAnnot
- (31) CGAP SAGE
- (32) SOURCE
- (33) HomoloGene
- (34) PanEnsembl
- (35) euGenes
- (36) SGD
- (37) FlyBase
- (38) WormBase
- (39) Pseudogene
- (40) DGV
- (41) dbSNP
- (42) GenAtlas
- (43) HGMD
- (44) GAD
- (45) BGMUT
- (46) HuGE
- (47) Atlas
- (48) Cell Signaling Technology
- (49) GenBank
- (50) H-invDB
- (51) HORDE
- (52) HUGE
- (53) IMGT
- (54) Leiden
- (55) miRBase
- (56) DME
- (57) OriGene
- (58) PubMed
- (59) R&D Systems
- (60) TGDB
- (61) Tocris
- (62) Abcam
- (63) Novus Biologicals
- (64) ProSpec
- (65) Sino Biological
- (66) GenScript
- (67) Qiagen
- (68) Cloud-Clone Corp.
- (69) OCA
- (70) Proteopedia
- (71) MOPED
- (72) neXtProt
- (73) Reactome
- (74) GeneGo (Thomson Reuters)
- (75) fRNAdb
- (76) DISEASES
- (77) SIMAP
- (78) GenomeRNAi
- (79) LifeMap
- (80) miRTarBase
- (81) MalaCards
- (82) Invitrogen
- (83) BitterDB
- (84) Vector BioLabs
- (85) ESI-BIO
- (86) RefSeq
- (87) BioSystems
- (88) MaxQB
- (89) IUPHAR
- (90) BioGPS
- (91) Illumina
- (92) COMPARTMENTS
- (93) HOMER
- (94) PaxDb
- (95) ApexBio
- (96) Addgene
- (97) antibodies-online
- (98) CYP
- (99) NONCODE
- (100) SwitchGear Genomics
- (101) TreeFam
- (102) PathCards
- (103) GeneReviews
- (104) GeneTex
- (105) Taconic Biosciences
- (106) GTEx
- (107) ProteomicsDB
- (108) SCBT
- (109) DGIdb
- (110) ClinicalTrials
- (111) FDA Approved Drugs
- (112) RVIS
- (113) SIGNOR
- (114) diseasecard
- (115) NIH Rare Diseases
- (116) Orphanet
- (117) UMLS
- (118) GTR
- (119) Disease Ontology
- (120) Genetics Home Reference
- (121) MeSH
- (122) MedlinePlus
- (123) CDC
- (124) NINDS
- (125) NCBI Bookshelf
- (126) ClinVar
- (127) Gene Damage Index
- (128) ViGene Biosciences
- (129) HPO
- (130) UDN
- (131) VISTA
- (132) FANTOM5
- (133) ENCODE
- (134) ProSci
- (135) Horizon
- (136) NURSA
- (137) IID
- (138) Cyagen
- (139) VectorBuilder
- (140) SNPedia
- (141) BRCA Exchange
- (142) St John's Lab
- (143) CIViC
- (144) ProteoGenix
- (145) dbSUPER
- (146) TISSUES
- (147) Gene ORGANizer
- (148) abm
- (149) CrownBio
- (150) Human Protein Atlas
- (151) GWAS Catalog
- (152) Monarch Initiative
- (153) DataMed
- (154) HumanCyc
- (155) genomics-online
- (156) UCNEbase
- (157) EPDnew
- (158) Applied Biosystems
