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Aliases for DCST1-AS1 Gene

Subcategory (RNA class) for DCST1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for DCST1-AS1 Gene

  • DCST1 Antisense RNA 1 2 3 5
  • RP11-307C12.11 3

External Ids for DCST1-AS1 Gene

Summaries for DCST1-AS1 Gene

GeneCards Summary for DCST1-AS1 Gene

DCST1-AS1 (DCST1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with DCST1-AS1 include Ovarian Cancer.

Additional gene information for DCST1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DCST1-AS1 Gene

Genomics for DCST1-AS1 Gene

GeneHancer (GH) Regulatory Elements for DCST1-AS1 Gene

Promoters and enhancers for DCST1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J155062 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 650.7 +0.0 10 3.1 HDGF PKNOX1 SMAD1 ARNT ZFP64 ARID4B SIN3A FEZF1 ZNF2 POLR2B EFNA4 ENSG00000251246 DCST1-AS1 DCST2 PYGO2 KHDC4 ENSG00000271267 GON4L UBAP2L MSTO1
GH01J155063 Enhancer 0.6 ENCODE dbSUPER 650.7 +1.6 1631 0.2 CTCF ZBTB33 ENSG00000251246 EFNA4 DCST1-AS1 ADAM15
GH01J155084 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 11 -21.3 -21286 2.5 HDGF PKNOX1 CLOCK SMAD1 MLX ARNT ARID4B NEUROD1 SIN3A FEZF1 EFNA3 THBS3 ADAM15 UBAP2L GON4L KHDC4 EFNA1 SLC50A1 ENSG00000271267 KRTCAP2
GH01J155015 Promoter/Enhancer 2 EPDnew Ensembl ENCODE dbSUPER 12.2 +46.7 46677 3.2 CLOCK ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 DCST1 KHDC4 GON4L ENSG00000271267 CLK2 UBAP2L MSTO2P LOC101928120 MSTO1 ASH1L-AS1
GH01J154965 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 10.6 +91.9 91937 12.2 CLOCK MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF416 SHC1 CKS1B UBAP2L GON4L CLK2 KHDC4 THBS3 YY1AP1 KRTCAP2 ENSG00000271267
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around DCST1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for DCST1-AS1 Gene

Genomic Locations for DCST1-AS1 Gene
chr1:155,045,191-155,063,991
(GRCh38/hg38)
Size:
18,801 bases
Orientation:
Minus strand
chr1:155,017,667-155,036,419
(GRCh37/hg19)
Size:
18,753 bases
Orientation:
Minus strand

Genomic View for DCST1-AS1 Gene

Genes around DCST1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
DCST1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DCST1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DCST1-AS1 Gene

Proteins for DCST1-AS1 Gene

Post-translational modifications for DCST1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for DCST1-AS1 Gene

Domains & Families for DCST1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for DCST1-AS1 Gene

Function for DCST1-AS1 Gene

Phenotypes From GWAS Catalog for DCST1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for DCST1-AS1 Gene

Localization for DCST1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for DCST1-AS1 Gene

Pathways & Interactions for DCST1-AS1 Gene

SuperPathways for DCST1-AS1 Gene

No Data Available

Interacting Proteins for DCST1-AS1 Gene

Gene Ontology (GO) - Biological Process for DCST1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for DCST1-AS1 Gene

Drugs & Compounds for DCST1-AS1 Gene

No Compound Related Data Available

Transcripts for DCST1-AS1 Gene

mRNA/cDNA for DCST1-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(3) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for DCST1-AS1 Gene

No ASD Table

Relevant External Links for DCST1-AS1 Gene

GeneLoc Exon Structure for
DCST1-AS1
ECgene alternative splicing isoforms for
DCST1-AS1

Expression for DCST1-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for DCST1-AS1 Gene

Orthologs for DCST1-AS1 Gene

Evolution for DCST1-AS1 Gene

ENSEMBL:
Gene Tree for DCST1-AS1 (if available)
TreeFam:
Gene Tree for DCST1-AS1 (if available)

No data available for Orthologs for DCST1-AS1 Gene

Paralogs for DCST1-AS1 Gene

No data available for Paralogs for DCST1-AS1 Gene

Variants for DCST1-AS1 Gene

Sequence variations from dbSNP and Humsavar for DCST1-AS1 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs483352774 uncertain-significance, not provided 155,061,444(-) C/A/G/T genic_upstream_transcript_variant, intron_variant
rs1000321813 -- 155,054,090(-) C/T genic_upstream_transcript_variant, intron_variant
rs1000322784 -- 155,053,786(-) A/G genic_upstream_transcript_variant, intron_variant
rs1000552011 -- 155,046,301(-) G/A intron_variant
rs1000779022 -- 155,048,397(-) T/A intron_variant

Additional Variant Information for DCST1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
DCST1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for DCST1-AS1 Gene

Disorders for DCST1-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for DCST1-AS1 Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
ovarian cancer
  • ovarian cancer, somatic
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for DCST1-AS1

genes like me logo Genes that share disorders with DCST1-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for DCST1-AS1 Gene

Publications for DCST1-AS1 Gene

  1. Integrated bioinformatics analysis of chromatin regulator EZH2 in regulating mRNA and lncRNA expression by ChIP sequencing and RNA sequencing. (PMID: 27835578) Li Y … He J (Oncotarget 2016) 2 3 58
  2. Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array. (PMID: 23535732) Eeles RA … Easton DF (Nature genetics 2013) 3 58
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for DCST1-AS1 Gene

Sources for DCST1-AS1 Gene

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