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Aliases for DCAF13P3 Gene

Subcategory (RNA class) for DCAF13P3 Gene

lncRNA

Aliases for DCAF13P3 Gene

  • DDB1 And CUL4 Associated Factor 13 Pseudogene 3 2 3 5
  • WD Repeats And SOF1 Domain Containing Pseudogene 3

External Ids for DCAF13P3 Gene

ORGUL Members for DCAF13P3 Gene

Previous GeneCards Identifiers for DCAF13P3 Gene

  • GC15P051237

Summaries for DCAF13P3 Gene

GeneCards Summary for DCAF13P3 Gene

DCAF13P3 (DDB1 And CUL4 Associated Factor 13 Pseudogene 3) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for DCAF13P3 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DCAF13P3 Gene

Genomics for DCAF13P3 Gene

GeneHancer (GH) Regulatory Elements for DCAF13P3 Gene

Promoters and enhancers for DCAF13P3 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15J050906 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 10.8 -34.9 -34850 6.2 PKNOX1 FOXA2 SMAD1 MLX ARNT ZFP64 ARID4B SIN3A DMAP1 ZBTB7B AP4E1 ENSG00000273674 ENSG00000259715 GABPB1-AS1 TRPM7 GABPB1 ENSG00000259298 USP8 ENSG00000259618 RPS20P34
GH15J050685 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 11.7 -257.5 -257453 2.6 HDGF FOXA2 PKNOX1 SMAD1 MLX ARNT ARID4B SIN3A DMAP1 ZNF2 TRPM7 GABPB1 USP8 ENSG00000259618 ENSG00000259298 ENSG00000259715 SPPL2A DCAF13P3 RPS20P34 GABPB1-AS1
GH15J050423 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 11.7 -519.6 -519585 2.5 HDGF PKNOX1 SMAD1 ARID4B SIN3A DMAP1 ZBTB7B YY1 SLC30A9 POLR2B USP8 ENSG00000259298 GABPB1 ENSG00000259618 DTWD1 TRPM7 ENSG00000259715 DCAF13P3 GABPB1-AS1 AP4E1
GH15J050676 Enhancer 1 Ensembl ENCODE 11.3 -267.2 -267212 2.1 HDAC1 PKNOX1 ATF1 RB1 INSM2 KLF17 ZBTB40 RAD21 RFX5 CHAMP1 GABPB1-AS1 ENSG00000259298 ENSG00000259715 SPPL2A USP8 ENSG00000259618 DCAF13P3 TRPM7 GC15P050634
GH15J051634 Enhancer 0.9 FANTOM5 11.7 +690.7 690650 0.3 HDAC1 PKNOX1 ZNF766 ATF7 CAVIN1 ZBTB11 CEBPB ZNF592 MEF2D SMARCA4 TRPM7 ENSG00000260618 DCAF13P3 SCG3 ENSG00000259712 AP4E1 MYO5C DMXL2 MAPK6 LOC105370816
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around DCAF13P3 on UCSC Golden Path with GeneCards custom track

Genomic Locations for DCAF13P3 Gene

Genomic Locations for DCAF13P3 Gene
chr15:50,944,129-50,946,573
(GRCh38/hg38)
Size:
2,445 bases
Orientation:
Plus strand
chr15:51,236,326-51,238,770
(GRCh37/hg19)
Size:
2,445 bases
Orientation:
Plus strand

Genomic View for DCAF13P3 Gene

Genes around DCAF13P3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
DCAF13P3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DCAF13P3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DCAF13P3 Gene

Function for DCAF13P3 Gene

Phenotypes From GWAS Catalog for DCAF13P3 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for DCAF13P3 Gene

Localization for DCAF13P3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for DCAF13P3 Gene

Pathways & Interactions for DCAF13P3 Gene

SuperPathways for DCAF13P3 Gene

No Data Available

Interacting Proteins for DCAF13P3 Gene

Gene Ontology (GO) - Biological Process for DCAF13P3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for DCAF13P3 Gene

Drugs & Compounds for DCAF13P3 Gene

No Compound Related Data Available

Transcripts for DCAF13P3 Gene

mRNA/cDNA for DCAF13P3 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for DCAF13P3 Gene

DDB1 and CUL4 associated factor 13 pseudogene 3:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for DCAF13P3 Gene

No ASD Table

Relevant External Links for DCAF13P3 Gene

GeneLoc Exon Structure for
DCAF13P3
ECgene alternative splicing isoforms for
DCAF13P3

Expression for DCAF13P3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for DCAF13P3 Gene

NURSA nuclear receptor signaling pathways regulating expression of DCAF13P3 Gene:

DCAF13P3

SOURCE GeneReport for Unigene cluster for DCAF13P3 Gene:

Hs.730493
genes like me logo Genes that share expression patterns with DCAF13P3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for DCAF13P3 Gene

Orthologs for DCAF13P3 Gene

Evolution for DCAF13P3 Gene

ENSEMBL:
Gene Tree for DCAF13P3 (if available)
TreeFam:
Gene Tree for DCAF13P3 (if available)

No data available for Orthologs for DCAF13P3 Gene

Paralogs for DCAF13P3 Gene

No data available for Paralogs for DCAF13P3 Gene

Variants for DCAF13P3 Gene

Sequence variations from dbSNP and Humsavar for DCAF13P3 Gene

SNP ID Clin Chr 15 pos Variation AA Info Type
rs1000182713 -- 50,943,248(+) A/C upstream_transcript_variant
rs1000935803 -- 50,942,201(+) G/A upstream_transcript_variant
rs1001603716 -- 50,944,753(+) C/T non_coding_transcript_variant
rs1004099074 -- 50,942,504(+) A/G upstream_transcript_variant
rs1005515348 -- 50,944,287(+) A/G non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for DCAF13P3 Gene

Variant ID Type Subtype PubMed ID
dgv4526n54 CNV gain 21841781
nsv1038778 CNV loss 25217958
nsv1047443 CNV gain 25217958
nsv569398 CNV loss 21841781
nsv569403 CNV loss 21841781
nsv569404 CNV loss 21841781

Additional Variant Information for DCAF13P3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
DCAF13P3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for DCAF13P3 Gene

Disorders for DCAF13P3 Gene

Additional Disease Information for DCAF13P3

No disorders were found for DCAF13P3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for DCAF13P3 Gene

Publications for DCAF13P3 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for DCAF13P3 Gene

Sources for DCAF13P3 Gene

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