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Aliases for DANT2 Gene

Subcategory (RNA class) for DANT2 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for DANT2 Gene

  • DXZ4 Associated Non-Coding Transcript 2, Distal 2 3 5
  • DXZ4 Associated Noncoding Transcript 2 3

External Ids for DANT2 Gene

Summaries for DANT2 Gene

GeneCards Summary for DANT2 Gene

DANT2 (DXZ4 Associated Non-Coding Transcript 2, Distal) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for DANT2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DANT2 Gene

Genomics for DANT2 Gene

GeneHancer (GH) Regulatory Elements for DANT2 Gene

Promoters and enhancers for DANT2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XJ115967 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE 650.7 +0.6 588 2.6 ZSCAN4 SIN3A YY1 ZNF335 GLIS2 ZNF366 RCOR1 RUNX3 EGR2 RXRA DANT2 LRCH2 DANT1
GH0XJ115689 Enhancer 1.1 Ensembl ENCODE dbSUPER 4.1 +278.5 278481 1.7 CTCF BACH1 ZNF2 RAD21 PATZ1 ZNF143 SMC3 PRDM10 CREM ZNF362 DANT1 LOC728825 EEF1GP5 DANT2 GC0XP115682
GH0XJ115686 Enhancer 0.6 ENCODE dbSUPER 4.3 +281.2 281213 2.9 ZNF121 ZNF316 LOC728825 DANT1 EEF1GP5 DANT2 GC0XP115682
GH0XJ115840 Enhancer 0.5 ENCODE dbSUPER 5 +128.0 128042 1.4 POLR2A DANT1 EEF1GP5 DANT2 GC0XP115682
GH0XJ115966 Enhancer 0.6 FANTOM5 0.7 +2.1 2072 0.4 ZNF335 ZBTB6 ZSCAN4 MLLT1 CHD2 DANT2 DANT1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around DANT2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for DANT2 Gene

Genomic Locations for DANT2 Gene
chrX:115,917,271-115,969,111
(GRCh38/hg38)
Size:
51,841 bases
Orientation:
Minus strand

Genomic View for DANT2 Gene

Genes around DANT2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
DANT2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DANT2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DANT2 Gene

Proteins for DANT2 Gene

Post-translational modifications for DANT2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for DANT2 Gene

Domains & Families for DANT2 Gene

Gene Families for DANT2 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with DANT2: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for DANT2 Gene

Function for DANT2 Gene

Phenotypes From GWAS Catalog for DANT2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for DANT2 Gene

Localization for DANT2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for DANT2 Gene

Pathways & Interactions for DANT2 Gene

SuperPathways for DANT2 Gene

No Data Available

Interacting Proteins for DANT2 Gene

Gene Ontology (GO) - Biological Process for DANT2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for DANT2 Gene

Drugs & Compounds for DANT2 Gene

No Compound Related Data Available

Transcripts for DANT2 Gene

mRNA/cDNA for DANT2 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(3) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for DANT2 Gene

No ASD Table

Relevant External Links for DANT2 Gene

GeneLoc Exon Structure for
DANT2
ECgene alternative splicing isoforms for
DANT2

Expression for DANT2 Gene

NURSA nuclear receptor signaling pathways regulating expression of DANT2 Gene:

DANT2
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for DANT2 Gene

Orthologs for DANT2 Gene

Evolution for DANT2 Gene

ENSEMBL:
Gene Tree for DANT2 (if available)
TreeFam:
Gene Tree for DANT2 (if available)

No data available for Orthologs for DANT2 Gene

Paralogs for DANT2 Gene

No data available for Paralogs for DANT2 Gene

Variants for DANT2 Gene

Sequence variations from dbSNP and Humsavar for DANT2 Gene

SNP ID Clin Chr 0X pos Variation AA Info Type
rs1000006532 -- 115,925,692(-) G/A intron_variant
rs1000096408 -- 115,909,984(-) T/A/C genic_downstream_transcript_variant, intron_variant
rs1000134443 -- 115,919,373(-) T/C intron_variant
rs1000166026 -- 115,970,745(-) C/T upstream_transcript_variant
rs1000246246 -- 115,912,992(-) C/T genic_downstream_transcript_variant, intron_variant

Additional Variant Information for DANT2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
DANT2

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for DANT2 Gene

Disorders for DANT2 Gene

Additional Disease Information for DANT2

No disorders were found for DANT2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for DANT2 Gene

Publications for DANT2 Gene

  1. Two novel DXZ4-associated long noncoding RNAs show developmental changes in expression coincident with heterochromatin formation at the human (Homo sapiens) macrosatellite repeat. (PMID: 26188586) Figueroa DM … Chadwick BP (Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology 2015) 2 3 58
  2. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory SG … Prigmore E (Nature 2006) 3 58
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 58
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for DANT2 Gene

Sources for DANT2 Gene

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